G13021


Basic Information

Item Value
gene id G13021
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17143610 ~ 17146998 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU16123
atatagagagagagagagagagagagagagagaggtgtccAGTTGATGTAGATACATTTGCATTGTCAATATGCAGCTGCCTGTGATGTTCAGGGAAGTAAATGAAAAGGCTTCTGGCACAGCATGTTCATAATTTTCTTTGAGAGACATATTCACAAGATTCTTCATTATGTCCAGCTTTCTGGGATCCTGGGGTCAAGATCATATTGTCAATAAAGCAATGAAGGACTATGGTATCTGGAGTATGGCTTAGTGTGTCTTTAGGTAATATGGAATAATATGGAATATGACTATTATCATTTTCCAGCCCCCTAAACCTAATCTGGTGGTGTGTACCATTTTTTGAAGCATGGGCTGATAACAGATTTAGGAAAGCAGACTGGAAATCAAGGGGTCCTTCATTTCTCAGTGTTTATCGATAAACAGTTGTATTCCCCTGGGTGCAATATTCCTTTTCACCAGCAGTGTGACCTTGAACTGACTGCAGGAACATTTCTGAGAAACTCTGCGCAGCAGCATCACAGGACCTATGAGGTCGCAGTTACATCTGTCTGCGGTTTTATTCAAgttcacttttcattttattttctctatttttacAGGGGACTTTTTGAAATGGACTAATGGTGCACAACCCCAGTACCTTAATCTTCTAGGAACTACTTTGGCTTTCTGAAGGCTCCATAACTAACTATAAGTTACTCATAAATAAGCAAGTCTGTGCATGTACCTCCACAGTGTATACCTCTTTCTTACAGACAGTCCTCAAAGAGTCCAACCTGCAGTGTGTTTGAATCCATATTTTTAAGATGGAGTCTTATGCATCACAGATTTatctgtattactgtattaccTCGCCCCagattttcaatttgtttttgtttatttttggttgttgttgtttgtgacAGATGTCTAATGCTTTGATTGATATATATACTTTTCCTGTTCAATTTCCATAGCCACAGATCATCCATGCATGCTGTCATTAACCAAATGAGCAAAAACAGATGgtgcaataacaaaacaaatgatttttttacccacaagaaaaatgaaaaataaaatgcaaggaaACTCTGTCGATTAGCCCCTTTTtggttagaaaataataataatcacagcaGTACTCAAATAGTGTTTACTGTAGAAGCCCCCAATATGAATTTAAAGTGGTCTTCCTGTTCTCTTTTAGATATGTGCCAGAGAAATTACATTGCTGTTGTTTATATAACTGAatatcacagaaaaacaacaatcatgcagcaacaacaaaaactggaCAATTTGgagacatttataaaaaaaaaatcacaattatgTTAAAGAGCTGTTGGTTTGGAGAGTTCTGTAACTatacataataaacatatacattactATATTTAGTAAGGTCAGCATACATACAAATTGATGTATTTGATTGCAAGAGTTCACGTACAAGTAATAATCTGTGTACTGATTGTGAACAAAAAGGTTTTGTAGTTCTATGTACAAACATGGGTAGAAATAAAGCTCACCTATACTATTAACTAAACCATGAgtagcaaaacaaatgtagtaCAACAAATGAAACTATAAACTATTACCTGAACCTATAAATAGATGTGCTTATATCTGCATTCCTTGCTTATACCTGCGTTTATGTCaggtaataaataataaatgtgatcgtataattgcttttcttggaaatataatgaatgcattCCCCTTtgacaacaatacaaaaaaagcttTCACATGTCAGTATCAGGTTAATTATACTGATATCACATATTTCAAGTCTTTGTTAagtgttttcttcccccctccGCTGTAGATGTCCTGGATGTCTGAACAGCACAGTTGGTCTTATAGTGAGCAGTGTATATTGGGGCTGTGTGGTTTCATATTTGTAGCAGCTTGTAAACTGCACAAACTCAAATGAATCAGCCAATAGACATTGATTATGTTCTGTTCTACCTGAGCTCTGAACCAGGCCCCAGGCACGAGAACAGATGGTGTGCCAGTGAACTGCTCTCGATCTCCTGTCTGAGCCTGCTGATCCCTTTCCAATTTTCCACATACCTTGAAAACAGCACAATTTAGAAATAAGTTTGTCGTTCTCACTTAGTAACTCCCACCTCAAACCTCTTCACTGTACTAAGCTTTAGGTGGTTCACCGTACTAACAGTGGACTAATCTAATTCAGTAAGGAGTTGCACTTCATGGATTTTCAGTCTCTGGTACTGTAACATCACTTTGTACTCCACTTTGGGATGCCACTGCACCGATATTTCCCTTATTTCATCTCATGCATTAGTATCTTTTCAGCAGCAGATGCTGTCTGAGAGAAcaggacattttatttacacaatccTTTTCCTGCTTCACAGTTGAATCACAGTTGAGTTGAAGATGTCTTTTCACAGATTACATTCGGAGAGcagcttttccttttcctgGTGGTGAAATTCTTGCGAAAGCTCTGCCCTGCCAGGAAGTACAAAATGGGGTCCAGGCAGCTGTTGGCACTGGCAAGGGGCTTTGTGACCTTGTAAGCAATGCTGGCACCTTGCAGAGCGGTACAGCTGACATCCATGTACCTGAACATGTAGTAGAGTGTCCGAGTGAGGTGGAAgggcaggaagcagatcatgaaTGCGCCCAGGACAATGATGATCATCTTGATGGACTTCTGCTTGGACTTCAAAGAGGAGGCCCCCCCCGCACTGGGCTCCAACAGCTTCTTCACCATCAGGCAGTAGCAAACCACAACCACCATGAAAGGGATGCAGAACAGCACCACGGAGATGATGGAGCTGTACACCAGGAAGTCATTGAAGAGCTCAATGCTGGTGGTGTCGTAGCAAACCTTCTGGCCCGACGTTGTGGTGCGGGAGAAATACAAGATGGGCGACTGGAAGGACATGATGGTGACCCACACCCCCACCGAGATCAGTCGGGCCCTGAGCGTGCTCACCCACTGCAGTGACTGCATGGGATAACAGACGCCCAGGAAGCGGTGAATACTGATACAGGACAGGAAGAGGATGCTGGTGTAGAGGTTCGCGTAGAAGAGGAAGCGGATGATTTTACATAAGGGTTCGCTGAAGGGCCAGTCACTGGCATCAGCGTAGTAATACACCAGGAAGGGCAGCGTCAGGATGTACAGGGTGTCCGAGACAGTCAGGTTGAACATGTAAATTGTGCTCGGCTTCCAGTGCTTTGTGCGGAAGACAATGACATACATGGCCATGATGTTGAGCACCAGGCCGATGACGAAGACAAGTCCATAGCTGGTTGGCAGGAGAATGTACTTGAAGTTTTCATCTAATTGGCATTTGTATGGGCTGCTCTGGTTCAACGTGGTCTTGTTTGAGACAGCCATCATTCATCGTTAGGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16123 True 3389 lncRNA 0.43 1 17143610 17146998

Neighbor

gene id symbol gene type direction distance location
AMCG00016349 fam168a,LOC107600264,LOC107594362 coding upstream 135825 16968432 ~ 17007785 (+)
AMCG00016347 NA coding upstream 220672 16882704 ~ 16922938 (+)
AMCG00016341 LOC103026990,LOC108277383,LOC108433282,LOC107743402,LOC107697442,LOC107578242,LOC100702672,LOC107653753 coding upstream 281559 16851493 ~ 16862051 (+)
AMCG00016338 NA coding upstream 294418 16822917 ~ 16849192 (+)
AMCG00016339 NA coding upstream 336338 16794297 ~ 16807272 (+)
AMCG00016356 fchsd2,LOC107600282,LOC107594367 coding downstream 56008 17203006 ~ 17232829 (+)
AMCG00016355 NA coding downstream 86278 17233276 ~ 17240318 (+)
AMCG00016359 rps3,LOC102795110 coding downstream 94881 17241879 ~ 17246793 (+)
AMCG00016358 NA coding downstream 100679 17247677 ~ 17250675 (+)
AMCG00016357 ints4 coding downstream 104552 17251550 ~ 17263292 (+)
G13019 NA non-coding upstream 10080 17133314 ~ 17133530 (+)
G12966 NA non-coding upstream 266708 16876345 ~ 16876902 (+)
G12929 ppme1,LOC107715282 non-coding upstream 327279 16815577 ~ 16816331 (+)
G12907 NA non-coding upstream 468421 16674893 ~ 16675189 (+)
G12906 NA non-coding upstream 471114 16672132 ~ 16672496 (+)
G13174 NA non-coding downstream 511759 17658757 ~ 17680909 (+)
G13266 NA non-coding downstream 1112270 18259268 ~ 18262343 (+)
G13267 NA non-coding downstream 1118204 18265202 ~ 18265406 (+)
G13270 NA non-coding downstream 1123035 18270033 ~ 18274439 (+)
G13273 grm5,LOC102779205,LOC106613232,LOC106581415 non-coding downstream 1141042 18288040 ~ 18288261 (+)
G13012 NA other upstream 21678 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 657607 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 2360075 14745316 ~ 14783535 (+)
G12587 NA other upstream 2705004 14437771 ~ 14438606 (+)
G12351 NA other upstream 3506609 13635442 ~ 13637001 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other downstream 415420 17562418 ~ 17599581 (+)
AMCG00016407 NA other downstream 1272019 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 2728058 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 4635108 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 6719269 23866267 ~ 23882946 (+)

Expression


Co-expression Network