G13065 (clns1a,LOC102781126)


Basic Information

Item Value
gene id G13065
gene name clns1a,LOC102781126
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17284403 ~ 17286829 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU16181
caaaatcagcaggggatcaaatacttttttccctcactgtagatgccTGGATCAATCAATAAACTGCGTGGTTGCACTAATACCAgcatgtcattaaaaaatatttattttcaaaccacTCACTCAAAGCAGTGACCTTAAATATATCTAATAGGTGTCAATTCCTCTTTGGGACAATATCTCAGTGTAATACCAGGGGAGAGGTCAGAATGTGTGCAAGGCTCTTGTTTGCCCCCTTGTGGAAACATGtacacaggaaaaaagaaacaaaccagcTGAGATGGTTCTTAAGGTCTTCTCAAAGCACGCTGTCACATGCCCTGAGAAGggatctatatttaaaaaataatccgATTTTGTTCGGTTGACTAACTTCTAGACTGTTTGCAGTATTTGAGTCTTGGCAGGATAGAATACAgtcagagaggagagaaaaagcaaaaacaaaatgagcacaGGATGCCCACAGGCTTAGGGAACAAAACCAAACAGGAAAAGGCAAATCAGAAATGCCCGATAACTAGTAAAAGATAACCTCTGGCTGTAAAACTggactgagagagagtgagagagagagagagagggaggaaagatTTGTATGATGGAACAATATGGTGTAAATTACATCCTGGCGCCTGGGCCTTGAGctgcataaacaaaaaaacttgccAAACAAGCTTCCTCCTGTGATTACAGGAGAGCCCAAGTGTATCGGCTGTCTGCCGCTGCCTCCTAACTAGGCCCGACTGTCTCCCGATCCTCTAAAGCACTGAAGGAAGACGCTAGCCctgtatatgtacagtaaatGCATCTCCCTCCAATCCCAACCACAAGGTTAGGCACCCCTCCATCTGCCCAATCCACACAGTGACACGAGCAGAGCCATGAACCCCCTGAACACAAAAGACCAATCCCATGGCATGACACTGTCCCAACATCAGAAGGGATGATGCCACCATAACGGGCTGATAAACTACAAGCCCTGTGGCGAAAAGGGGCCGGGAGATGGCAGTGTGGACTGCCCGTGCCGTACCTTCGAAGTCTGCCGCGGTCTCCTCAGTGCGGACGCCAGCCATGTGGTACTGCTGGGCCACGGACTCGGCCAGCATGCCTTCCAGCCGCTCCAGTGTGGCCTGGCCCTCCACCGTCAGGTGAGACAGGCCCTCCTCGTAGGTGTAAAAGGTTGGCAAGTCAACCTGGCCTTGCTCAGCTTCTTCAACGTCGTACTCCTCCCCCTCGAAGTCATTGTCCGAGTCGTCGTCCTCCGGGTCGGGGTGCAGTGCCTGGCATTCGCACATCGCGGAGAACATGGGCTCCAGTGCAGCTTTATCACTGGGAACAAATCGGATCTCCGTGATGGGATCAGAGTCATCGTCACTGTCgtcgtcttcctcctcctccgctGCTGATGCCTTCTCCTCCATTTCAGACTCCTTCGCCTCTTCATCTGGAAAGGGTTGACATTAAATAAAAGCCTCTCCTACACAGAGACTAGAAAGAACAAAAGATGCTTGCgttcctgtatttttttttttttttttttttaatttctttccacCAATTCTGTGGAGCCACTTTTGTTCCAAACTTCTTATTGGTCTTCTAGAAAAATCCACACAAACTAAGCAGACCTAACAATAAAGGCCCAGGCCTTCCACCCTACCcttagtttttacatttaagccacgtgacaagaaacaaaactaaaaacactttACACTTTTCAAATATTCTACTAGGAGTGAAGAACTGATTCTTGGTCAACACTGGAAAAACTTGCCCAGGCTAACAAACGTACTCAGACAAACCTACTTAAAT

Function

symbol description
clns1a Acts upstream of or within axon extension. Predicted to be located in cytoplasm; nucleus; and plasma membrane. Predicted to be part of spliceosomal complex. Predicted to be active in cytosol. Orthologous to human CLNS1A (chloride nucleotide-sensitive channel 1A).

NR:

description
methylosome subunit pICln isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16181 True 1818 lncRNA 0.36 3 17284403 17286829

Neighbor

gene id symbol gene type direction distance location
AMCG00016354 NA coding downstream 137418 17145993 ~ 17146985 (-)
AMCG00016352 NA coding downstream 161164 17122706 ~ 17123239 (-)
AMCG00016353 NA coding downstream 166668 17103974 ~ 17117735 (-)
AMCG00016351 LOC106613240,LOC107600776,LOC107577125 coding downstream 212956 17040305 ~ 17071447 (-)
AMCG00016350 NA coding downstream 261309 17009731 ~ 17023094 (-)
AMCG00016361 NA coding upstream 6259 17293088 ~ 17294875 (-)
AMCG00016368 myo7aa,myo7a,LOC107660700,LOC106581013 coding upstream 93602 17380431 ~ 17413600 (-)
AMCG00016367 capn5b,LOC108440168,LOC107706463,LOC107548164,LOC101464883 coding upstream 140675 17427504 ~ 17460486 (-)
AMCG00016369 dcun1d5,LOC106612886,LOC107600360,LOC107712802 coding upstream 179854 17466683 ~ 17472931 (-)
AMCG00016375 cul5,LOC107714978,LOC107554266 coding upstream 188589 17475418 ~ 17490419 (-)
G13045 rps3 non-coding downstream 38073 17241944 ~ 17246330 (-)
G12978 NA non-coding downstream 359731 16918566 ~ 16924672 (-)
G12921 NA non-coding downstream 492734 16791423 ~ 16791669 (-)
G12915 NA non-coding downstream 534484 16749719 ~ 16749919 (-)
G12902 NA non-coding downstream 660497 16623683 ~ 16623906 (-)
G13091 NA non-coding upstream 88437 17375266 ~ 17377539 (-)
G13126 NA non-coding upstream 207026 17493855 ~ 17494346 (-)
G13129 NA non-coding upstream 209094 17495923 ~ 17496347 (-)
G13254 NA non-coding upstream 875958 18162787 ~ 18165770 (-)
G13334 NA non-coding upstream 1539365 18826194 ~ 18901976 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 17656 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 414401 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 423224 16858541 ~ 16861179 (-)
AMCG00016327 NA other downstream 809233 16470611 ~ 16475170 (-)
AMCG00016293 NA other downstream 2492434 14785198 ~ 14791969 (-)
AMCG00016376 NA other upstream 251205 17538034 ~ 17541342 (-)
G13367 NA other upstream 1804410 19091239 ~ 19105381 (-)
AMCG00016453 NA other upstream 2842079 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 3329680 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 3379313 20666142 ~ 20683024 (-)

Expression


Co-expression Network