G13254


Basic Information

Item Value
gene id G13254
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 18162787 ~ 18165770 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU16425
TTGAAATGTTGCAGAAAAAACCCCCACTTACCTGCACATGGAGTTACAGTAAGTAGCGAGTTAACAATGTTACGATAGTTTGTTAATAGACTCTAATCCAGGGCAGTAACCAGCAGGCGGGTGTTTAGTATTTCATTaagtttttaattgtaaataaaatgtaatacaacagAAGTTTCAGTTGTAAAaagatatactgtatacagtaccttgtaaattaaaaagttacattatctacaatatttactttttacaaaacatattcttTATTACCTATGGGGTTGTATTTAATTCACTGTAAACTGTCAAAGATTTGATGTCTGTTAAAAGGTGTGCGTTGTACAGACAATTTACTGATCAAACTTGCAATTTTCAAAAAATGGTTACCGATCTctcattaatttagtttgtcAATTTAATCACTGCTGTGCATTTCccgttaaaaaaaacaacactttttttaatggaattgttAACTTCAAAAGACTTCCTTCAATCAGTCTAACTAGTAAGCAATGACATGTCAATGAAGGAAACTGCATTTTACAACAGTTCAGTCAAAAATGATAATGACCTGTTCATTTGGATGTCTGCCATGTTTTGGCAATAATACgtttcaatgttttatatatatatatatatatatatatatatatatatatatatatatatatataaatctatatctatgaaaacattaaacattcatTGGTATGTACTGTAGACAGTTGCCTTTTTAAATCTTCATTAAGATCTCACTGCTTTAACAAATTGCACACAGATTAAAGAAGATACATTCAGTGGTGATTCAATGTTTCAACCACAGTTGCTTCTAAAAATGCTACTTGGTCTTATCATATGGCCTCTTTTGCAAAATGTGAGGCCTATTAGGTCCTTTgtgatgtgaaatgtattttaagagaaTGAACTGTAATATTCCTTTTACATTCATTCATAGAAGTACTGctattcaaataattgttttgattaatgtCAGTCTTTCAAGTAGTTTAACACAATTGGGAAAATTTTAGAAAAATCCATGTATGTCCTTAATTTACAGTACAATCTCCAGAAGAGCTTAAGCAATTGATGTATACAAACCATGCAAGTAGCCtggaaataaatagttttataaaccAATTGCAAGAGACAATACCAAAATGAAAGCGAAACCATAACAAGGCATACTATGAAATAGGTGGACCACATTCATAGATCTGTGAACAGCTCCTTTTTTTacgtattatttttatataacaaattGAGAACAAGATCAGGATGACTTTCAAAGTTTTCTTGGCCCCGTAAAAGATTTACTTTCAAAACTTTCAAACtccaaatgtgttaaaaaattACTTCAGCCCAgaccaaaacaacattttgccCCACCTACCAAAACAAAGTGCcatcattcttttatttttaactcattCACCCCAATTTGGAAtcaccaattaattaattaattaggctCCCCACTATGACATGGTGCTGCTTCAATAGGCATGAGACAAAGCCCACATCCTCCGATATGCATGTTGTCAACACCATGTACCTACCAAAAGGCCTACAGATACAATTTATCACATTGATTAGATAAGTTGACGCAGATAAGACCCCGACCTTGCAGGCACCTGAGCAGCCACAGGAGTAGTGTGCGGTGAAGACGATTCTTCTCTCTACTGCCCACTATCAAAGTACCCTCTGCGTCAAGTCTCTGGGTCGGTCGAAGCCTAAATTGCACTTTTCCAAACTTATGGTGCTACTTGCTAGACTTTACTGCAGGTCAATTTACATCCAACTTTGTGGagaataaaatatctgaaaatcatCCTGTAATTTGTTAAAAGGTTAGCAAAAGCTCGATCAGATTCCTTcagagcatttgttttttatttttagccaaAGGGTAAAGAAGAAAAGGTAATGGAAAGCAATGCCAGTAAACAATGCTGATGACACACGTGATTCTCTTTAAAATTTACTTAAATACATCAAACAGATATAGGTACAGGACCTTACATTTCAATAGTTTaactaatgaatacatttttctagGGAATAGGTCATGTACTTGTAGCAGCAAAgtccaggaacaaaaaaaagatcCTGGCCTTAATGTTTCTACACAAATTGTAGGAATGTTTTGCCTCTTATTGTTGTCATGGCTATTGATCAGGATCGGGAGAATGCTTGCAATGACAGCCTGAAGCCGGATTGGATCTCATTTGTTTGAATGATCTCTCCTGTTTCCTGTCTCACTCTATCATGCATCAAAAGCACTCATTTCTGTAGAATGTATTACAATAACTAAAAGGTTTTTGCGTAGAAGGACAGTTTACACCTGAATTCaatataacaattttaataGAAAGCAATTATactttcattaaacaaaaaagaacattgTATTGTAACTTTTTTACATGATTTGCTAATTCCACTAAGTTTCAGTTTTTCTGATTTTTATGCCTCTAGTGTTAcgcattcaaattaattattgctAGATTTAGAAACTCTGCCTATCAAGATATGTGGATCATTTCAGCTAATTAGTGCCTCCCACAATTTCACAGTTTCCATCTGCAAATATGTTGGAAGAGAGCAGGGTGATGCTTAATTCAAAACCAAACGGATCATACCCCCCCTGCAAAAATGGtttcacattgaaataacaCTGATCAAGTGATTGTGCTCCACAGGACGGGCCACTCTGGAGCGGACACTTTCCGGCATCAGCACTCGGGGCCCCCAGTCTCAGGAGCCCAGCTGCATCTCAATTTCAGGTGGAACTACAGTGTATCTGGGATCCAGCTTAGGTATAAAATCCCCAAAATCCTGGGATGCTTTGGTTCCAAATACATCCAGTGCTTTTCTGTTCATCACAGCAAACCTGCcaacacagaggaggaggagatcaGTACGAGCAAAGGCTGGGAAATCACCAGGTTTTCA

Function

GO: NA

KEGG:

id description
ko04514 Cell adhesion molecules

RNA

RNA id representative length rna type GC content exon number start site end site
TU16425 True 2958 lncRNA 0.35 2 18162787 18165770

Neighbor

gene id symbol gene type direction distance location
AMCG00016392 fzd4,LOC107600811,LOC107551868 coding downstream 71230 18086767 ~ 18091557 (-)
AMCG00016391 dync2h1,LOC106613214 coding downstream 93222 18020039 ~ 18069565 (-)
AMCG00016389 dync2h1,LOC106613216,LOC108413322,LOC107566891,LOC103461033 coding downstream 158154 17985431 ~ 18004633 (-)
AMCG00016390 dync2h1,LOC106613216,LOC106593015 coding downstream 214651 17935136 ~ 17948136 (-)
AMCG00016382 LOC107706429,LOC107681140,LOC107548160,LOC107718985 coding downstream 375692 17785858 ~ 17787095 (-)
AMCG00016395 rab38 coding upstream 63341 18229111 ~ 18242329 (-)
AMCG00016396 NA coding upstream 93390 18259160 ~ 18262198 (-)
AMCG00016398 grm5 coding upstream 108460 18274230 ~ 18292859 (-)
AMCG00016399 grm5a,LOC108423821,LOC107693909,LOC107720647,LOC107556864,LOC107701127,LOC107555132 coding upstream 164423 18330193 ~ 18349377 (-)
AMCG00016400 NA coding upstream 214694 18380464 ~ 18399758 (-)
G13129 NA non-coding downstream 666440 17495923 ~ 17496347 (-)
G13126 NA non-coding downstream 668441 17493855 ~ 17494346 (-)
G13091 NA non-coding downstream 785248 17375266 ~ 17377539 (-)
G13065 clns1a,LOC102781126 non-coding downstream 875958 17284403 ~ 17286829 (-)
G13045 rps3 non-coding downstream 916457 17241944 ~ 17246330 (-)
G13334 NA non-coding upstream 660424 18826194 ~ 18901976 (-)
G13339 NA non-coding upstream 892635 19058405 ~ 19058673 (-)
G13341 NA non-coding upstream 911598 19077368 ~ 19077823 (-)
G13366 NA non-coding upstream 922454 19088224 ~ 19088632 (-)
G13392 NA non-coding upstream 999816 19165586 ~ 19253414 (-)
AMCG00016376 NA other downstream 621445 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 896040 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 1292785 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 1301608 16858541 ~ 16861179 (-)
AMCG00016327 NA other downstream 1687617 16470611 ~ 16475170 (-)
G13367 NA other upstream 925469 19091239 ~ 19105381 (-)
AMCG00016453 NA other upstream 1963138 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 2450739 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 2500372 20666142 ~ 20683024 (-)
G13962 NA other upstream 5289322 23455092 ~ 23455811 (-)

Expression


Co-expression Network