Gene
RNA
| Item | Value |
|---|---|
| gene id | G13266 |
| gene name | NA |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030122.1 |
| NCBI id | CM030122.1 |
| chromosome length | 54868152 |
| location | 18259268 ~ 18262343 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | description |
|---|---|
| ko04142 | Lysosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU16438 | True | 838 | lncRNA | 0.51 | 4 | 18259541 | 18262343 |
| TU16441 | False | 236 | lncRNA | 0.44 | 2 | 18259268 | 18259834 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00016393 | tmem135,LOC107718730,LOC107701128,LOC107693910 | coding | upstream | 94139 | 18157707 ~ 18165129 (+) |
| AMCG00016394 | tmem135,LOC107701128 | coding | upstream | 158465 | 18098011 ~ 18100803 (+) |
| AMCG00016388 | NA | coding | upstream | 174165 | 18081922 ~ 18085103 (+) |
| AMCG00016387 | pdgfd | coding | upstream | 371532 | 17875444 ~ 17887736 (+) |
| AMCG00016386 | NA | coding | upstream | 568008 | 17686856 ~ 17691260 (+) |
| AMCG00016397 | NA | coding | downstream | 102395 | 18364738 ~ 18370387 (+) |
| AMCG00016411 | fat3 | coding | downstream | 366085 | 18628428 ~ 18635806 (+) |
| AMCG00016412 | NA | coding | downstream | 400659 | 18663002 ~ 18663364 (+) |
| AMCG00016405 | NA | coding | downstream | 441524 | 18703867 ~ 18762647 (+) |
| AMCG00016408 | mtnr1b,LOC103355263 | coding | downstream | 529580 | 18791923 ~ 19090628 (+) |
| G13174 | NA | non-coding | upstream | 578359 | 17658757 ~ 17680909 (+) |
| G13021 | NA | non-coding | upstream | 1112270 | 17143610 ~ 17146998 (+) |
| G13019 | NA | non-coding | upstream | 1125738 | 17133314 ~ 17133530 (+) |
| G12966 | NA | non-coding | upstream | 1382366 | 16876345 ~ 16876902 (+) |
| G12929 | ppme1,LOC107715282 | non-coding | upstream | 1442937 | 16815577 ~ 16816331 (+) |
| G13267 | NA | non-coding | downstream | 2859 | 18265202 ~ 18265406 (+) |
| G13270 | NA | non-coding | downstream | 7690 | 18270033 ~ 18274439 (+) |
| G13273 | grm5,LOC102779205,LOC106613232,LOC106581415 | non-coding | downstream | 25697 | 18288040 ~ 18288261 (+) |
| G13274 | NA | non-coding | downstream | 48185 | 18310528 ~ 18315356 (+) |
| G13323 | NA | non-coding | downstream | 521105 | 18783448 ~ 18826531 (+) |
| AMCG00016379 | cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 | other | upstream | 659687 | 17562418 ~ 17599581 (+) |
| G13012 | NA | other | upstream | 1137336 | 17116793 ~ 17121932 (+) |
| AMCG00016329 | NA | other | upstream | 1773265 | 16484355 ~ 16486003 (+) |
| AMCG00016288 | NA | other | upstream | 3475733 | 14745316 ~ 14783535 (+) |
| G12587 | NA | other | upstream | 3820662 | 14437771 ~ 14438606 (+) |
| AMCG00016407 | NA | other | downstream | 156674 | 18419017 ~ 18473689 (+) |
| AMCG00016429 | lamtor1,LOC106581407 | other | downstream | 1612713 | 19875056 ~ 19879725 (+) |
| AMCG00016490 | atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 | other | downstream | 3519763 | 21782106 ~ 21832148 (+) |
| AMCG00016502 | NA | other | downstream | 5603924 | 23866267 ~ 23882946 (+) |
| AMCG00016506 | NA | other | downstream | 5675708 | 23938051 ~ 23945024 (+) |
