G13274


Basic Information

Item Value
gene id G13274
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 18310528 ~ 18315356 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU16449
GTAGCCTAGCACATGTGATGCAGCCTCGTAAATAAATATGGTGACTGCAAACAACAAGCCAGAGCTTGAGGACCCTCCCGTATCCTTCAGGTCTCCTGTTTGGGAAAATTACTACAGTGGCAATGGGCAAAGACAAGTGGATAAGTGCCGGCATTGTTATACTGAAATCGGGGAGCCGACTCTGAGAACAAAGTCTTCTTCAATCAATTAGATGACAGCTACACCATTTGAAGGGAAGAACCATTTCTTAGGGGACcttaaggaaatatatattatttggagACAGTTTGTAGAGAAGTGTAAGATGTAGGTAATGCTCCATTCCACGGggtgcaattaaatatattcaatacatATGACATGTTGTTTATTGGGTGACTAGTTTGAGTAGAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16449 True 394 lncRNA 0.53 2 18310528 18315356

Neighbor

gene id symbol gene type direction distance location
AMCG00016393 tmem135,LOC107718730,LOC107701128,LOC107693910 coding upstream 145399 18157707 ~ 18165129 (+)
AMCG00016394 tmem135,LOC107701128 coding upstream 209725 18098011 ~ 18100803 (+)
AMCG00016388 NA coding upstream 225425 18081922 ~ 18085103 (+)
AMCG00016387 pdgfd coding upstream 422792 17875444 ~ 17887736 (+)
AMCG00016386 NA coding upstream 619268 17686856 ~ 17691260 (+)
AMCG00016397 NA coding downstream 49382 18364738 ~ 18370387 (+)
AMCG00016411 fat3 coding downstream 313072 18628428 ~ 18635806 (+)
AMCG00016412 NA coding downstream 347646 18663002 ~ 18663364 (+)
AMCG00016405 NA coding downstream 388511 18703867 ~ 18762647 (+)
AMCG00016408 mtnr1b,LOC103355263 coding downstream 476567 18791923 ~ 19090628 (+)
G13273 grm5,LOC102779205,LOC106613232,LOC106581415 non-coding upstream 22267 18288040 ~ 18288261 (+)
G13270 NA non-coding upstream 36089 18270033 ~ 18274439 (+)
G13267 NA non-coding upstream 45122 18265202 ~ 18265406 (+)
G13266 NA non-coding upstream 48185 18259268 ~ 18262343 (+)
G13174 NA non-coding upstream 629619 17658757 ~ 17680909 (+)
G13323 NA non-coding downstream 468092 18783448 ~ 18826531 (+)
G13342 NA non-coding downstream 775885 19091241 ~ 19105528 (+)
G13364 NA non-coding downstream 846226 19161582 ~ 19161812 (+)
G13411 NA non-coding downstream 940369 19255725 ~ 19255932 (+)
G13415 NA non-coding downstream 946743 19262099 ~ 19262412 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 710947 17562418 ~ 17599581 (+)
G13012 NA other upstream 1188596 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 1824525 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 3526993 14745316 ~ 14783535 (+)
G12587 NA other upstream 3871922 14437771 ~ 14438606 (+)
AMCG00016407 NA other downstream 103661 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 1559700 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 3466750 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 5550911 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 5622695 23938051 ~ 23945024 (+)

Expression


Co-expression Network