G13323


Basic Information

Item Value
gene id G13323
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 18783448 ~ 18826531 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU16508
AAGGTTGTAGgtgttgtggcttcacaaatgctttgctgcatacctcggttgtaacgagtggttatttcagtcaaagttgctcttctatcagcttgaatcagtcggcccattctcctctgacctctagcatcaacaaggcattttcgcccacaggactgccgcatactggatgtttttcccttttcacaccattctttgtaaaccctagaaatggttgtgcgtgaaaatcccagtaactgagcagattgtgaaatactcagaccggcccgtctggcaccaacaaccatgccacgctcaaaattgcttaaatcacctttctttcccattcagacattc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16508 True 336 lncRNA 0.50 2 18783448 18826531

Neighbor

gene id symbol gene type direction distance location
AMCG00016405 NA coding upstream 20801 18703867 ~ 18762647 (+)
AMCG00016412 NA coding upstream 120084 18663002 ~ 18663364 (+)
AMCG00016411 fat3 coding upstream 147642 18628428 ~ 18635806 (+)
AMCG00016397 NA coding upstream 413061 18364738 ~ 18370387 (+)
AMCG00016393 tmem135,LOC107718730,LOC107701128,LOC107693910 coding upstream 618319 18157707 ~ 18165129 (+)
AMCG00016406 med17 coding downstream 319829 19146360 ~ 19153760 (+)
AMCG00016413 NA coding downstream 397730 19224261 ~ 19237093 (+)
AMCG00016416 NA coding downstream 412656 19239187 ~ 19251854 (+)
AMCG00016415 NA coding downstream 490297 19316828 ~ 19322281 (+)
AMCG00016421 NA coding downstream 498049 19324580 ~ 19325707 (+)
G13274 NA non-coding upstream 468092 18310528 ~ 18315356 (+)
G13273 grm5,LOC102779205,LOC106613232,LOC106581415 non-coding upstream 495187 18288040 ~ 18288261 (+)
G13270 NA non-coding upstream 509009 18270033 ~ 18274439 (+)
G13267 NA non-coding upstream 518042 18265202 ~ 18265406 (+)
G13266 NA non-coding upstream 521105 18259268 ~ 18262343 (+)
G13342 NA non-coding downstream 264710 19091241 ~ 19105528 (+)
G13364 NA non-coding downstream 335051 19161582 ~ 19161812 (+)
G13411 NA non-coding downstream 429194 19255725 ~ 19255932 (+)
G13415 NA non-coding downstream 435568 19262099 ~ 19262412 (+)
G13458 NA non-coding downstream 551469 19378000 ~ 19442114 (+)
AMCG00016407 NA other upstream 309759 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 1183867 17562418 ~ 17599581 (+)
G13012 NA other upstream 1661516 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 2297445 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 3999913 14745316 ~ 14783535 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 1048525 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 2955575 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 5039736 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 5111520 23938051 ~ 23945024 (+)
G14057 NA other downstream 5253486 24080017 ~ 24110182 (+)

Expression


Co-expression Network