G13342


Basic Information

Item Value
gene id G13342
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19091241 ~ 19105528 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU16530
TCTGGTTTTTCAGTCGTCtttattaactgaaatgatacattttttgatGTGTAAGGCACATTTGTAAATCTGCACACATGCCATATTGTATGACAGTCAGTTTCAATAACTTAATAGTACAAAATGTGTAGAACTACATTACACACAATACAGTGACAATGTAGTGTCTGATCAATGATGAGTTTCATTCACAGAAACACTGCAGCTCACACTCTTACATCCAGTGGCAGCCACATCCAGGTGAAAGGATCCTTTGGTAAGCATGGAATTAACACCTTTAGCATTCAATAAGACAGCATCATAGAGGCAAGATGAATCAAattttctttagaaaataaGCACATAACACTTGATAACTTCTTTGCACAGAACACAATGGCCACCCTACCCCCCCAGACAATGTCATTCATCGAAGGCACATATGAAAAGAATGATGCACTGTGGCAAACCGTTTATTTCCTGATTCTTTTCCCAAGAGGAACAGAATAGGAagcataattttaaaaagacgCAAGGCAGTAGGAAAAGTGTAGAATTCATTATCCTGTAGAACCAATTGGTTTctaaaaaacattgtgaaacaaAGTAATGCTGGAAAAAATGGGAATAGGGAAGGATAGAGGTGTGGAGGGGGAGAAACCCATAAGTGGGGAGCAATGAGTCTGTGTGAGGGCGTCCTGCATTACTCGATGGCACCAGGCCGGGTCGCCACGTAGACGAACACCACGATGAGCAGCACCACCACTGCCAGTGTGGGAAGCACCACCGTGGCGATCTGCTGCCGTGCCTCCTGCATGGCCTGTTTCCTCTCCTTCTTGTCCTTCGACGTCTCTTTCTTGGGCTTTCCTTTGAGCTGCCTCAtggctctctccctctctggagGCAACGGAAGGGGCTCTTTGCAACACACAGCAATGTGGGGGGCGATGAGTGAGTAGGGCTGTGACCACAAGGATGGAAACGTCGGGCCTCTGTTTCTGTCTACACAGCGGCAGAGCCGGGCGACTGGTTCAATGGGGAGGAACAGGCTCGGCTGGTCTCTTTCTTGCGGTTGTTGCTCGTAATCCTGCGCGATGGCTGACAGTTTGGCTGTGTCCGCCCGcctcctgtctctctgctctCCGGGATTACGTGGCAGCAGAGCCGTCCGTCTCAGCCCGGGGAGAGGGAGGCCGGAACAGCGCCGACTAGCGGCCAGGAGCGGCATAGCGCCCCCACTGCCGCAGCCCCAATGAAACGCTTCCTGCTTCACTACAGGCAGAAAAGACTCGATTGCAGTGCTAGCAAAGTGCAACAGGTGGC
>TU16531
TCTGGTTTTTCAGTCGTCtttattaactgaaatgatacattttttgatGTGTAAGGCACATTTGTAAATCTGCACACATGCCATATTGTATGACAGTCAGTTTCAATAACTTAATAGTACAAAATGTGTAGAACTACATTACACACAATACAGTGACAATGTAGTGTCTGATCAATGATGAGTTTCATTCACAGAAACACTGCAGCTCACACTCTTACATCCAGTGGCAGCCACATCCAGGTGAAAGGATCCTTTGGTAAGCATGGAATTAACACCTTTAGCATTCAATAAGACAGCATCATAGAGGCAAGATGAATCAAattttctttagaaaataaGCACATAACACTTGATAACTTCTTTGCACAGAACACAATGGCCACCCTACCCCCCCAGACAATGTCATTCATCGAAGGCACATATGAAAAGAATGATGCACTGTGGCAAACCGTTTATTTCCTGATTCTTTTCCCAAGAGGAACAGAATAGGAagcataattttaaaaagacgCAAGGCAGTAGGAAAAGTGTAGAATTCATTATCCTGTAGAACCAATTGGTTTctaaaaaacattgtgaaacaaAGTAATGCTGGAAAAAATGGGAATAGGGAAGGATAGAGGTGTGGAGGGGGAGAAACCCATAAGTGGGGAGCAATGAGTCTGTGTGAGGGCGTCCTGCATTACTCGATGGCACCAGGCCGGGTCGCCACGTAGACGAACACCACGATGAGCAGCACCACCACTGCCAGTGTGGGAAGCACCACCGTGGCGATCTGCTGCCGTGCCTCCTGCATGGCCTGTTTCCTCTCCTTCTTGTCCTTCGACGTCTCTTTCTTGGGCTTTCCTTTGAGCTGCCTCAtggctctctccctctctggagGCAACGGAAGGGGCTCTTTGCAACACACAGCAATGTGGGGGGCGATGAGTGAGTAGGGCTGTGACCACAAGGATGGAAACGTCGGGCCTCTGTTTCTCGTCTGCACCTCAGTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16530 True 1302 lncRNA 0.51 2 19091241 19105528
TU16531 False 997 lncRNA 0.58 2 19091241 19103960

Neighbor

gene id symbol gene type direction distance location
AMCG00016408 mtnr1b,LOC103355263 coding upstream 613 18791923 ~ 19090628 (+)
AMCG00016405 NA coding upstream 328594 18703867 ~ 18762647 (+)
AMCG00016412 NA coding upstream 427877 18663002 ~ 18663364 (+)
AMCG00016411 fat3 coding upstream 455435 18628428 ~ 18635806 (+)
AMCG00016397 NA coding upstream 720854 18364738 ~ 18370387 (+)
AMCG00016406 med17 coding downstream 40832 19146360 ~ 19153760 (+)
AMCG00016413 NA coding downstream 118733 19224261 ~ 19237093 (+)
AMCG00016416 NA coding downstream 133659 19239187 ~ 19251854 (+)
AMCG00016415 NA coding downstream 211300 19316828 ~ 19322281 (+)
AMCG00016421 NA coding downstream 219052 19324580 ~ 19325707 (+)
G13323 NA non-coding upstream 264710 18783448 ~ 18826531 (+)
G13274 NA non-coding upstream 775885 18310528 ~ 18315356 (+)
G13273 grm5,LOC102779205,LOC106613232,LOC106581415 non-coding upstream 802980 18288040 ~ 18288261 (+)
G13270 NA non-coding upstream 816802 18270033 ~ 18274439 (+)
G13267 NA non-coding upstream 825835 18265202 ~ 18265406 (+)
G13364 NA non-coding downstream 56054 19161582 ~ 19161812 (+)
G13411 NA non-coding downstream 150197 19255725 ~ 19255932 (+)
G13415 NA non-coding downstream 156571 19262099 ~ 19262412 (+)
G13458 NA non-coding downstream 272472 19378000 ~ 19442114 (+)
G13490 NA non-coding downstream 352521 19458049 ~ 19462968 (+)
AMCG00016407 NA other upstream 617552 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 1491660 17562418 ~ 17599581 (+)
G13012 NA other upstream 1969309 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 2605238 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 4307706 14745316 ~ 14783535 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 769528 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 2676578 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 4760739 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 4832523 23938051 ~ 23945024 (+)
G14057 NA other downstream 4974489 24080017 ~ 24110182 (+)

Expression


Co-expression Network