G13392


Basic Information

Item Value
gene id G13392
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19165586 ~ 19253414 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU16588
gagagagagagaaaattattCATCACGGTTTTCATTACAGGGCTACAGCGCCCTCTAGCCAGCAGGCAATTGTATTGGTTTTGAATAAAATCAGCTGAAATTCTCTCGCTAACAGATGCACACACGTCGATTGATGATTGTCACCATCTCCAATCAGTCCTAATAGCTGGCAAACTCCACATTGCTGGAGGAAGCAGCCAGGACACATTGGGCAGACAGGttagtgagaaagagagagacagagagagagggagaatatACAAATAGACCAAGTGATGAGTTTATTATAGACAAGTCCTTTGTAACCAGTACATTTTGATTCTCTTTTTggccttttacattttgtggtgCTATTCCTATGACAGCAGGTCTACTGCAGTAGGCCGGGCTGAATCACTTCAAAAGACAGCACAATAAATCACAACAAAATACACCAAtgggtaatttaattaattcctccaatttaatttgttaaaagtttaaattaattaagccAACCAGGCTGAACAGACAGTGGCTCTGGAGACCAAGGAATGAAATGTCAGTAGTCATGTTTTCTCTGCACTTGACAATTTGGTACATATCCACAGAAACTAATTGCAGAGGAAAAGACAATGTGGTAAAagtttctgatttttttaaataaaaacaaaatgagataATTCATAGGAAATGCACTGCACCTGCACATTTACACATACAGAGTTGAACAGCATAGCGAATTTTCCATTATCCCTGTATCTGTGTGACAAAGTGTGCACCACGATGCGTTCAGTTTTTCAATTCTCCCATCTGACTCCACTTTTAGACAAATTCTGTTAATACACatccatatttatatacagcagTTACTTCCAAGTTAATTGCAccataaaattacaaaaacatttttgctaCAAGACACATGCCAAACGACCGATCACGCATTCCGAgggttttaaataatacaatcttaCATCAACGCATTCGAAATGAGCCCGTCCGCTTGTTCACCAGTTTTGTCCGTGTTAACATATGTCATACATATGGCAAAGCAGAAGAACATGTTGTAAACTTAATTTCAGAGATAAATCAcagcttttgatttattttagtaatagtTTCTCTTTAACCACCACTTTATTGTTGCTGCATTGTGACCAGGACTCCCCatcaaaccaacaacaaaatgatACACGACCATGTTCCTGTTTAATAAAACTCACTACAGTGACTTAATACCCCAAGACTAAAATCTCTGGATTGATTTAGGCGACTGGATTACAAAATCAGATTCGCTAGACCCACAGACCCTTGACTAGCCTAAAAATCCCATGAGATTTATATCTACTTTATTAAGCCTATGGATATAGCAAATACAGTAAACCATCTCTGATGAAGAATGTTAGAGGAGAGACCATGAATTTGTCCACAAACTACTTACACTTCTTTTTATCAGCTCCTGCCATAATTTCCACAATTGCCATACACATTACATATACGGCAGGCTAATTAAAAAAGTAGAAATTGAAGGTTTCTAACATCATGCATGTTTGACAGcaattgaatattaaataatggGGACAAAtccataaaagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16588 True 1622 lncRNA 0.36 2 19165586 19253414

Neighbor

gene id symbol gene type direction distance location
AMCG00016410 NA coding downstream 3858 19155334 ~ 19161728 (-)
AMCG00016409 NA coding downstream 22068 19109142 ~ 19143518 (-)
AMCG00016404 NA coding downstream 126082 19025838 ~ 19039504 (-)
AMCG00016403 NA coding downstream 150837 19006083 ~ 19014749 (-)
AMCG00016402 NA coding downstream 264005 18897556 ~ 18901581 (-)
AMCG00016419 NA coding upstream 23884 19277298 ~ 19279668 (-)
AMCG00016420 mre11a coding upstream 28288 19281702 ~ 19316677 (-)
AMCG00016418 cwc15,LOC100196400 coding upstream 112670 19366084 ~ 19375596 (-)
AMCG00016424 sesn3 coding upstream 124586 19378000 ~ 19406939 (-)
AMCG00016423 fa76b,fam76b,LOC106603374 coding upstream 174041 19427455 ~ 19437740 (-)
G13366 NA non-coding downstream 76954 19088224 ~ 19088632 (-)
G13341 NA non-coding downstream 87763 19077368 ~ 19077823 (-)
G13339 NA non-coding downstream 106913 19058405 ~ 19058673 (-)
G13334 NA non-coding downstream 263610 18826194 ~ 18901976 (-)
G13254 NA non-coding downstream 999816 18162787 ~ 18165770 (-)
G13413 NA non-coding upstream 3224 19256638 ~ 19256919 (-)
G13414 NA non-coding upstream 4909 19258323 ~ 19258557 (-)
G13615 NA non-coding upstream 749735 20003149 ~ 20004940 (-)
G13680 NA non-coding upstream 1062328 20315742 ~ 20316579 (-)
G13762 NA non-coding upstream 1214832 20468246 ~ 20513404 (-)
G13367 NA other downstream 60205 19091239 ~ 19105381 (-)
AMCG00016376 NA other downstream 1624244 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 1898839 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 2295584 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 2304407 16858541 ~ 16861179 (-)
AMCG00016453 NA other upstream 875494 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 1363095 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 1412728 20666142 ~ 20683024 (-)
G13962 NA other upstream 4201678 23455092 ~ 23455811 (-)
G13969 NA other upstream 4445735 23699149 ~ 23700255 (-)

Expression


Co-expression Network