G13458


Basic Information

Item Value
gene id G13458
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19378000 ~ 19442114 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU16666
TTGTTTTAAGAGCTTTATTGAAACAATGAGATTCTTAAATGTTTCTAGAagcaactgtaaaataatatccCGCTCATATAAATGTGATAATAGTTTTACAAGCAAACCCCATTGTTCCGTACctaggaatacaaaaaaaaggaaaaacctcatggaaaaataaaaagtgcagaTTAACTCACTGAAGAGTTACCAGAGTAATACACACAAGGAGTTATAAGATATTGTGTACATCTTTTATCACAGCTTCAATTTACCACGGCCTGGATTAAAACGAGACCGATAGCACTGCCATTCGGACTGTGTTGGAGCTCCAATGTCTGTTTTGGGTGATTCCAAGATATGACTGCCAGAGCCCTGCATTTGTCATGACTTAACTGAATTTCAgtcatgcaaaacacagggcccttCATCATAGTATGAACACAGTATTATAAAAGATTATATCACACCTCtttatgtaatatgtttttatacaaaACCACTAAATCAGTGCTATCACTTTGTTTGAATAAAGGCCTATCGAGCGCAAAGATGCCAGTACAGAGTCTCTCCATGGTATATCTCACATAAGGCATTCCGTTGTCTAGGATACACAGCTGCAACAATATGCAATGCTTTTGACATTcgttttcttctttatttttgtgctgCTCTGAACCGCCAAAGGCTCTAAATAAAGCAGATAATCAAAGCCTGCTGTATAAAcagttaaaagtattaaaactattgcaaaaattagaaaccttttttttttttttTTCAAAATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16666 True 771 lncRNA 0.35 2 19378000 19442114

Neighbor

gene id symbol gene type direction distance location
AMCG00016417 NA coding upstream 15530 19339826 ~ 19362470 (+)
AMCG00016421 NA coding upstream 52293 19324580 ~ 19325707 (+)
AMCG00016415 NA coding upstream 55719 19316828 ~ 19322281 (+)
AMCG00016416 NA coding upstream 126146 19239187 ~ 19251854 (+)
AMCG00016413 NA coding upstream 140907 19224261 ~ 19237093 (+)
AMCG00016432 clpb,LOC107568463,LOC108261447,LOC102793156 coding downstream 316213 19758327 ~ 19799814 (+)
AMCG00016430 NA coding downstream 369288 19811402 ~ 19814610 (+)
AMCG00016431 anapc15 coding downstream 424164 19866278 ~ 19869018 (+)
AMCG00016438 NA coding downstream 443644 19885758 ~ 19898268 (+)
AMCG00016439 pola1,LOC107666635,LOC107705179,LOC107721886,LOC107586771,LOC104949401 coding downstream 469726 19911840 ~ 19938673 (+)
G13415 NA non-coding upstream 115588 19262099 ~ 19262412 (+)
G13411 NA non-coding upstream 122068 19255725 ~ 19255932 (+)
G13364 NA non-coding upstream 216188 19161582 ~ 19161812 (+)
G13342 NA non-coding upstream 272472 19091241 ~ 19105528 (+)
G13323 NA non-coding upstream 551469 18783448 ~ 18826531 (+)
G13490 NA non-coding downstream 15935 19458049 ~ 19462968 (+)
G13491 NA non-coding downstream 21367 19463481 ~ 19463953 (+)
G13493 NA non-coding downstream 26466 19468580 ~ 19468788 (+)
G13494 NA non-coding downstream 27521 19469635 ~ 19470098 (+)
G13495 NA non-coding downstream 28061 19470175 ~ 19470456 (+)
AMCG00016407 NA other upstream 904311 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 1778419 17562418 ~ 17599581 (+)
G13012 NA other upstream 2256068 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 2891997 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 4594465 14745316 ~ 14783535 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 432942 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 2339992 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 4424153 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 4495937 23938051 ~ 23945024 (+)
G14057 NA other downstream 4637903 24080017 ~ 24110182 (+)

Expression


Co-expression Network