G13490


Basic Information

Item Value
gene id G13490
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19458049 ~ 19462968 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU16699
CTAAAACAGAGGAAGACAAACAAGAGACACAACTTCATTCAATGTATgaaatttattttgataaaaattCAACTGCCTTTGTTCTCTCTCAGAAGACATCTCCTACAGGTTTGCACTCTTCTCTCTGAACATATTCCGTACATGTTATAATTAAACTCTCCGACACAGACTCCCTTTACAGTATCTACAGAGGTAtgtacaaatgaaaacacaatgacattgaaagaaaccaaaaaaagaaaaaaaatacaacttacTTATGCAAATATCATATGACTATTCCACCGTTTGTTTATTGTGGCTACtttgttttcagataaaatTGGAAATGACCTTCTGAAGGTTAAACCTTCATTTTATGAGTGTCTGACATATTACTATTCCCATGGTATATTTGTACCCCCACTAAAATCTTTCATGACCAGCtgtcttaaagaaaaaaaaaaaaaaaaatcttccacctcattaatgtaataaaaacaatctaaaaataTTAGTTTGTGACAAGTTACTAAATCTGAACTTTTTCAggtaaataaaagcatttaaaaaattcaGTAATAATTCATATTCACTGCAAGCACCTCAAATGTTTGCAATGGGTACATTTACGTTCCTGCCTgttaaatttattttgattatttgtatattgaaaaacattgaattatCATATGTACAGGACAGCCACTAGCAACAactacatatacagtacaggcCTGAATTATTGATTTACAAAATGGGGTCCAAAGTTGGCACATGGAGTTTATTTTTGGTGACATAAAATAGTCAGTGTCAGGtttagtaacaaaacaaataaataacttataataatataacccAAACACGTTTAATGAAAGTAAATATCCACAAGGAAATAACTTAAAACCAGGAGAAGATGCACATGATTTAGAATATCCATGATCTATAAAAGACTCAGAATGTATGCAACAGGGTTGGAGATTAACTAATTGTTGAATTTGAGAAGCATATAAACTATGGAAACTAAACTGTCAAGCTAAGAAAGGAAAgtaaaagaacagaaaaatatacattaaccTGAATATGTTATGTGCAACACAAAATCTTTTAAACCACAAAAGACAACTCAGCAGTAACGTACAGAAGAGTCTGAGTATACAGTAGCAACACATATTTTAGTGGAACATGGGCATTGAGTCTTTATTTACAGAGGTGCCAAATGGGTTTTATGCCTCAAGTTgacttgcattttattcttcaaggaaaatcaaatgtatGACAAACTGAACATAATttgacaataaaaatgaaataataataaacaaagactACATATTCTCTACACTAGAAAAACTATTAGCCCTATTATTAGTCTTTATTTTGTCATAATCTTTAATTACTTTTAGTTGCAATTACTATGTAGTTAAACTGAATACATTACCTATTGAGAATGAACTAATGTTGCCCTTTGAGtatattcaattataatttaCTGCTGCCAATGTATAGtagatatttctgaatataaaatgcattactcAATACTTCTGAAAGAAGAAGCATAAAGGTTCCAGCACCCctgtaaatataaacatgtacaCTGTaggtatattttttatacaatatGTCTTTCTCTAAAGGCAACTCAGATATGGTAAGGCAAATCAATAATATACACATTCTGCCAGGGTTCAATTGACCATAAATGCCTTAAAGGGCCATTAGCCCTTATTTAAAACACCCTCAGAATTTATTTACACACTCACGCATTTACAAAAAGTTAAATTCAAGGGAATAGCTTCCACACATAACTCAGATACACAAACTGCTACATTCTTTTGTCTCCAAATCCACAGTCTTACAATagacttaattttaaaatattgaccTTGTAAAACATTGTGCAATGGATAAACATACACAAGTAACATGTACTAGTATGTAgttaactgtattttaaagggTTATTTAATGTGATTGTATTCTTTGTAGTGAtttcacagaattaaaaaaatgcatttaacattgaaacaaaacaaaaacaaaacaaaaaaacatgtttattcagcatttttttctttgttaaatgGTAATGATTGTTGAATAACTTTACCTGAGACCTAACAGTCTGAAGAGGGTCCACACATATTTAGTTAATATCTAAAATGCACTTACACATACTTGTATAGTTTTGTAGGCAGTTCAATTACTCTTTAAAGAAGATGGACTACTCTTTCCAATccaaaagtttaataaaatctatactttaaaaagtttttttttttttttttttttgctttttgtctgCAATGGAAGAACAGAAGGATTCCTTCTCTTCCCAAATTCAGCctatatggttttaatttgattatcaCAATGAAATGTCTTTCCATACCACCTGTCTATGGTAGGCAAACTCAAATCATGAAGGCGGAAACTCGGTCTTGGACATTACTGTGTGTTTAGTATtttatgcaattaacacatGGAACAGCACTATGTGTGAGTATGAGAGACACAACCATAAGCAGTATTTTGTACATGTGACACCAAAGACAAACTAGCTATTTGTGCTACCGGAAGCTGTGCATatggtttattaaaatgcattgaagtCAGATGTCACTGTAAGTAATAAGTCCCACACCCATATCAGTGTCAGCTTTTCTCCTCTATGCTCAGCTTGGAAactttagaaaataatacagattcCCAGGATATAAATACAGTGAGTCATATAAACATAGGAATAACCATGTAGCAAAACAGTAATTTAAGATGAAGGAACAAGCAGAACGCAGCACTGACTTTGATTGTCTGTAATTGTCCTTGGTTTCACTGTAAAAGAAGGCTTCAACAataagaattttaaaatataggtTTTTGCTGAAATTAAGATCCCAATCAGATCTGCAtagatctttaaatattttctaaaaggcAAATCTTTGGGGAGAAAAGCACTTAGCAATGTGGACAGATTGACCTGTTTTCTGGAcgcaatgttttttgttgaatGTGTGAAAGATTTGTATCTACATTTCTTAAAGACCCTCTTGATCAATCTCATAAAACTACATCTCTACAATTTGCTTTTTTATGACATCAGAGACCTATGTGTTTAAACAGGGTGAATTTGAGAGTCTTCCATCACCAGCactaaacacatatttaaaaaataaaggactCAAACATCTGCTTGCAAACACTGTTTccaatatgaaaaaaaagaaaaacatgaaacctGCAACCACTATTGTTTTGGCTTTTCAAAGCTGAACaaagtaacactttatatttacACTGTTGGAATTACCATTCATTACTGAGACGACAGGTTATTACCATAAAGGGTAACAGTACGCGTTTTAATACTAGCAGAATTTACAGTTGATAACactgtataaacaaatatattagaaaaacaatcttTTCCACAGTTGATGAACTATATTGAAAGACACCACAAGCtgttcagaaataaaacaatattctttCCTTTGCTGTTCTCCTAGGCTCAGCATGGGTTGTCATGTCCCAGGCAATCATTCAAACCTTTCCAAAGTCTTTAAGGTAATTCCCTTCAAACATAAGGTGttactgatttttattttttatttttatttgttttattagaaaAGATGTTGTCTCTCACAGTCTGTAACTAATTCCGGATCGTTTCTGAATCGCCACCTTCTTCGATGGCTTCCATTGATCCTGTGGTTTCCAAGCAACCGTTCATCCTCAGACTTTCGCCTGCCTGCTCCTGGAACTGCTCGTACTCCTCATCCAGGAAGTCAAGAGAGTTGTTGCTAGGCAAACCGCGGATGGTGAATTTATGGGAAACCTTGGTCCATTGGTTCCGATTGGCTGCGACTCTCTCATACAGCTCTCTAGATTTGGGGAAAAGTTCTTGGAGCAGCCTTGTAAATAGGCATGGCAATATGCTCCATGAAGCTGATCTGCAGCTCGGGAATGTATGCTTTCTCCCTGTCCATCATTTCACTGGGTCTGTTGCCCATGGCTTTCTCCTGCACAATGGGATGGGAAAACAAAGTTAgacaagcatttaaaatgagGCATGGGATGTTAAAGATTATGCATCATGACATCTACTGCATCTGCAGCATGATGCTTTGAGTTAGAAATACTGTGAACCATTGTAGATGTGCTCACCATTATCCATGTACCAACATATCACTGGATGATGTAAAActcatttcttttttcaagCATTTCAAAAGAATACATACCAGATCTCCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16699 True 4243 lncRNA 0.33 2 19458049 19462968

Neighbor

gene id symbol gene type direction distance location
AMCG00016422 NA coding upstream 13164 19438593 ~ 19444885 (+)
AMCG00016417 NA coding upstream 95579 19339826 ~ 19362470 (+)
AMCG00016421 NA coding upstream 132342 19324580 ~ 19325707 (+)
AMCG00016415 NA coding upstream 135768 19316828 ~ 19322281 (+)
AMCG00016416 NA coding upstream 206195 19239187 ~ 19251854 (+)
AMCG00016432 clpb,LOC107568463,LOC108261447,LOC102793156 coding downstream 295359 19758327 ~ 19799814 (+)
AMCG00016430 NA coding downstream 348434 19811402 ~ 19814610 (+)
AMCG00016431 anapc15 coding downstream 403310 19866278 ~ 19869018 (+)
AMCG00016438 NA coding downstream 422790 19885758 ~ 19898268 (+)
AMCG00016439 pola1,LOC107666635,LOC107705179,LOC107721886,LOC107586771,LOC104949401 coding downstream 448872 19911840 ~ 19938673 (+)
G13458 NA non-coding upstream 15935 19378000 ~ 19442114 (+)
G13415 NA non-coding upstream 195637 19262099 ~ 19262412 (+)
G13411 NA non-coding upstream 202117 19255725 ~ 19255932 (+)
G13364 NA non-coding upstream 296237 19161582 ~ 19161812 (+)
G13342 NA non-coding upstream 352521 19091241 ~ 19105528 (+)
G13491 NA non-coding downstream 513 19463481 ~ 19463953 (+)
G13493 NA non-coding downstream 5612 19468580 ~ 19468788 (+)
G13494 NA non-coding downstream 6667 19469635 ~ 19470098 (+)
G13495 NA non-coding downstream 7207 19470175 ~ 19470456 (+)
G13496 NA non-coding downstream 48945 19511913 ~ 19512166 (+)
AMCG00016407 NA other upstream 984360 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 1858468 17562418 ~ 17599581 (+)
G13012 NA other upstream 2336117 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 2972046 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 4674514 14745316 ~ 14783535 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 412088 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 2319138 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 4403299 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 4475083 23938051 ~ 23945024 (+)
G14057 NA other downstream 4617049 24080017 ~ 24110182 (+)

Expression


Co-expression Network