G13494


Basic Information

Item Value
gene id G13494
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19469635 ~ 19470098 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU16703
GTGCTGTCATCCGGCAAAGACCTGGGAGTGTAAGTGAACTCTGCAAAGCTGGGATGGATTTCATCCACTGGTTGGATTCCATTCGTCAGCAGTTTGGTCACTTCTTCCTCCGATACCTgaaattaatagaaaaatgCAAGACTGGGAAGAGCCATGTAGCACGTCCTGTTGAATTAATTAACTCAATAAGGATTTGTtctaaagtaattaaaagttaaGGAGAGATGTGATGGCCCATATGGTAATCTTAATAACACACCATGGTTTGGATGTAGCAGATAAAACATAATGGCCTCAAAAATGCCAttcagaaaatgttcaaaaagtCCAATTGACTGTATAGTGTGAAAGTATCTTGGGAAATATCCCAAATGTCTTGTGATTATTACCTTCATGTGGTACATCATCATTTCATTAGCAAGGTGACTCCTAAACTGGGCCTCATGGACCTTCTTGTAGAGCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16703 True 464 lncRNA 0.36 1 19469635 19470098

Neighbor

gene id symbol gene type direction distance location
AMCG00016422 NA coding upstream 24750 19438593 ~ 19444885 (+)
AMCG00016417 NA coding upstream 107165 19339826 ~ 19362470 (+)
AMCG00016421 NA coding upstream 143928 19324580 ~ 19325707 (+)
AMCG00016415 NA coding upstream 147354 19316828 ~ 19322281 (+)
AMCG00016416 NA coding upstream 217781 19239187 ~ 19251854 (+)
AMCG00016432 clpb,LOC107568463,LOC108261447,LOC102793156 coding downstream 288229 19758327 ~ 19799814 (+)
AMCG00016430 NA coding downstream 341304 19811402 ~ 19814610 (+)
AMCG00016431 anapc15 coding downstream 396180 19866278 ~ 19869018 (+)
AMCG00016438 NA coding downstream 415660 19885758 ~ 19898268 (+)
AMCG00016439 pola1,LOC107666635,LOC107705179,LOC107721886,LOC107586771,LOC104949401 coding downstream 441742 19911840 ~ 19938673 (+)
G13493 NA non-coding upstream 847 19468580 ~ 19468788 (+)
G13491 NA non-coding upstream 5682 19463481 ~ 19463953 (+)
G13490 NA non-coding upstream 6667 19458049 ~ 19462968 (+)
G13458 NA non-coding upstream 27521 19378000 ~ 19442114 (+)
G13415 NA non-coding upstream 207223 19262099 ~ 19262412 (+)
G13495 NA non-coding downstream 77 19470175 ~ 19470456 (+)
G13496 NA non-coding downstream 41815 19511913 ~ 19512166 (+)
G13500 NA non-coding downstream 94702 19564800 ~ 19565112 (+)
G13593 NA non-coding downstream 544846 20014944 ~ 20018086 (+)
G13599 NA non-coding downstream 561395 20031493 ~ 20032916 (+)
AMCG00016407 NA other upstream 995946 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 1870054 17562418 ~ 17599581 (+)
G13012 NA other upstream 2347703 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 2983632 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 4686100 14745316 ~ 14783535 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 404958 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 2312008 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 4396169 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 4467953 23938051 ~ 23945024 (+)
G14057 NA other downstream 4609919 24080017 ~ 24110182 (+)

Expression


Co-expression Network