G13593


Basic Information

Item Value
gene id G13593
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20014944 ~ 20018086 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU16825
TCAGGAGAACAAGAGTGggatttaaagttttattagAAATACATTACGTTTAATTCTATTctaatcatacaaaataatccTGTATGCTTAGGTTGTATAGAGGGGAAAGCACATATGTCATGTTGTACAAATCAGAAATGTTACACACATGTCGTTTTTACAGCACACCCAGTTTATATTCTGCCATGATATGAGGCTCACCCATGACTTCGCTCTGTGCTGGACATTCAAGAAGTCTTCAAATCCAATTGCCTCATCATTGCCTCTGAGAGTATCTAGTGCGATATTTGAGCTCTGAAGGAATGGCAGGCGCTGTATCTGTAAATACATTACCTGTCGTGCTGCCCTGTACTCCATCTGAAGTTTCAAAGGTGCATGAAGCCCCTGAATATTTCTGAGTGTCGTAAAGTTCATCTTATCTTGGTTGAGCTGAAACTGTTAAAAACCGAGAATGAGCATTAAGGACATTAGACTGTGATTTTCGGATGGTGTAATTTACtgcaaaatgtttcatttggggataataaataaatacataaacctcAATCTTAACTGAATTAATGTGATAACATGGTGAGCAATAACATATGCTAGAAGTAGCAATCACTCTCAACTGTAAGAGTTAAATTACTTAAGGAGTGTAgattacaaaattgtattttgtatgttgtgTGCTCTTTCATAATgctaagtcaccctggataagggcatcggCTTAAAAAATATAGTAACTCATTAGTAGACTCATAGTAACATTTTAAGTGTAAATTGAAGGTACCAGTTTACACAGGTCTTGAATATCAATTTACTATACAGAGAAGGCTTCACTTGACATGCGTCTGTAGTGAGTGGTAGTGAGATGGATTATGACACTGAAAGCTATTGCgtttaaacaaaagaaactcAAACTTGAAAACTCAAATGggatgaataaaaataaagaacaaagtCAGAAGAGAGgtgtaaataaattgtattgtgcttgatttataatttgtaCTGTAGTATTGCACTTCTGTATTGCTCTTGTAACCTGTAagtggccctggataagggcataaataaattaaataaaccctgAAATGAAAGCAGTGGGACACTTACATTCTTCTCAGAGAGCTCCAGGGGATGACTGGGCAGAAGCTCATTCTTCACACTGCTGAAGCTGAGCCCAGAGACAGGAAGGGGTGAAACTGCTCAATATGGGGTTTCGGAGCACTCACTGTGCATATATTAGCTCTCAAGCCTTCCTATTATGCTTTATACAATTCAATGTATAGAAACACCTGTTTAACATCATTAGTGTGTCACGCTTACATGGAAACCAGCATTATGCCATTATATGTGCACTGTACGATATGGACTTGTAGCTGGCAGGCAGATTGCTGCtattgaatgtcatttaaaacaCGTACATGCAGTAATTTAGcttcaataaaacaacaagTAATAATAGTGGAATAATCAAGCTTGGTTCATAACTCAGGATAACAGGCATTCATTAAAGACAGTGCAGACCGCTCACCCCTTGCGCAGTGTGTCCGGTACCCCGTAAGCCCCTGCTTGGGGACAAAGCCCTGTGACAGGGACGCTGTCCTTCAGCTGGGAGCGCAGGCCTCTGGTATTCTGTAACACATGTGAAGCAGGATGTGATCATGGATGTGTTGCACACCTTGATTGTCACGCTTAGTTTAACTGCAAATGAACGACGTCTCTCAGCTTCGAAGACAACCGCTGACTTTCGGTTTCATTTGTATCCGCTGACAAACTGATCACGCTTTTCTTTCCCTGCTCCGCCACGAAGCAATGGAGTGTCTCTGGAGCTCAAATACAGGGTTGATCACACTAATAACGGGCTATGAAGTCAGACGTGCTACATTGTCAGCACACAAGATGAACACAAGGCCTCAATATTGTAGTTTGCTGCGAAAATGaatgcacacacagcagtgaCTAATCAGAACTAAGCAAATcgttattttcaaaacaaaccctACATTTCCCATCATCGGGGGAAAAGGGTCTGttcataacattaatttaaaagcagtATTATAGGATatttctgtataaaaataaataaagtaagcGAAAAGTTTACTTACCATTTCGTGTAATGTGCTGCTTCACTGTGCGATACACCGAGTCACACCGTAGACTTCCGGGCCGCGTCTGAAATAACACACGTGACAAATTACGCAACTTCCG

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0000151 ubiquitin ligase complex cellular_component
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16825 True 2208 lncRNA 0.40 3 20014944 20018086

Neighbor

gene id symbol gene type direction distance location
AMCG00016450 NA coding upstream 35 20010296 ~ 20014909 (+)
AMCG00016451 NA coding upstream 5085 20007997 ~ 20009859 (+)
AMCG00016441 hgd,LOC102787666 coding upstream 9005 19998432 ~ 20005939 (+)
AMCG00016439 pola1,LOC107666635,LOC107705179,LOC107721886,LOC107586771,LOC104949401 coding upstream 76271 19911840 ~ 19938673 (+)
AMCG00016438 NA coding upstream 116676 19885758 ~ 19898268 (+)
AMCG00016449 NA coding downstream 41257 20059343 ~ 20064622 (+)
AMCG00016448 abcg1,LOC108426925,LOC107684024,LOC107561305,LOC107677096,LOC107755138,LOC106612441 coding downstream 86830 20104916 ~ 20126284 (+)
AMCG00016457 NA coding downstream 290893 20308979 ~ 20316754 (+)
AMCG00016458 NA coding downstream 310619 20328705 ~ 20331775 (+)
AMCG00016456 klhl15,LOC107727232 coding downstream 332562 20350648 ~ 20353506 (+)
G13500 NA non-coding upstream 449832 19564800 ~ 19565112 (+)
G13496 NA non-coding upstream 502778 19511913 ~ 19512166 (+)
G13495 NA non-coding upstream 544488 19470175 ~ 19470456 (+)
G13494 NA non-coding upstream 544846 19469635 ~ 19470098 (+)
G13493 NA non-coding upstream 546156 19468580 ~ 19468788 (+)
G13599 NA non-coding downstream 13407 20031493 ~ 20032916 (+)
G13659 NA non-coding downstream 201357 20219443 ~ 20256020 (+)
G13662 spcs2,LOC107677086 non-coding downstream 268989 20287075 ~ 20289834 (+)
G13681 NA non-coding downstream 300931 20319017 ~ 20319339 (+)
G13682 eif2s3,LOC107727229,LOC107686712,LOC107741782 non-coding downstream 323988 20342074 ~ 20345072 (+)
AMCG00016429 lamtor1,LOC106581407 other upstream 135219 19875056 ~ 19879725 (+)
AMCG00016407 NA other upstream 1541255 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 2415363 17562418 ~ 17599581 (+)
G13012 NA other upstream 2893012 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 3528941 16484355 ~ 16486003 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 1764020 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 3848181 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 3919965 23938051 ~ 23945024 (+)
G14057 NA other downstream 4061931 24080017 ~ 24110182 (+)
AMCG00016537 NA other downstream 4461620 24479706 ~ 24561807 (+)

Expression


Co-expression Network