G13682 (eif2s3,LOC107727229,LOC107686712,LOC107741782)


Basic Information

Item Value
gene id G13682
gene name eif2s3,LOC107727229,LOC107686712,LOC107741782
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20342074 ~ 20345072 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU16941
CACAGCTGTACTGgcgtttattatttttcttggtgAATAGAACAGACAATCTTCATGTGCGATTTCACGAGTCATTTATAGGAAGTGCAATGGTGTATGACAGCATGAAATTACAAAAGCCTGAACAACAAGAATTAGTTTAGAAATTACAGCACATGGGAACAGAAATGGACCAGAGCACGCATTTGTTCAAAACGTTTTAATTGGTTTTCAATGACAGCTGTTGGCGATACTATCAAACCTCCACGTGATCCCAAAACTAACCTCTTGTATGTATAAATTAGGCAAATTTGTAATGGAAGATACACAactcctttttaaaatgcagaaccCTAGGATTCCAGTCCAGAGCCCGGGTGGGTATTCACCACAGCTCTGCAGTGTTGGACAGGCGTCGGGTGGGGTGCCAGGTACACGGTGGTCCGGCCGACTCTCAGTCATCGTCTACGGTGGGCTTGATTGTTACGCCTCTCCTGATCTGACCCCAGCCGATTAAACtagatgaaaacaaaagggGGGGAATACATTAAACAACCTAATATCACCATTTTGTAAAATTGGAGCCTCGAGTAAAAAGGTAGTTACCGCCAATGCTTCTCCACTCTCCGGCTCAAGGCGATCTTCTCCCCCACCTCGGTGCACACGGGGTTGGTCAGCACAATCTTGGCAAGGTCAGCCTTCACCGCGCTTACTCTGCCGCCCGTCGACAGGGACCCGATGTTCACCATCAGAACCTCATTCTTAGACAGCTTTTGGACCTGGGGCAAAAGAATAGAAGCTATTACTTCTTGAGACATACAGCAGCATATACCGCGATTTGAGGGATTACAGATTTACGGTTACGCATCAGAAAAATTAGTTTGAACCTTTGAATTGGGTCTACTGAGCATGAACATCGCAGCCGTAGAAAGTATGTTATTTCTCTTAACCCAAGCCTTCTCTCTTCTTCAGCAATCAGTGgatgtggatttgtttttgtccagCCATCCATAAAACCAAGGCAAACTATTGTACCTTCAATGCACCACTAGGTTCGGTGCAAGCAAGCAAGTGCCTACttgtgcagttgtttttttaacttcactACAGAtcccacagagctgcagagggCTAAACTGCCTGGGATACTGAAGGAAACGCTTTGTGCGCACACCCAGCAGTCTGCGCAGGAGGAAGTAGGAGATCTCCAGCTCGGTAAAGATCTCGGGGAGTGCGCCCACAGCCCCCAGGACCTGGCCCACCATACGGTCCGCCCGGCACAGTGTGGGATCGATCTTCGTGCCcacacctgcaacacacacagggtgTCGGTCATTGCCAACTCCAGAGGGGAACTGCATCAGATTATTTGATAtacaacacaacagaaaaatataaaaaccctCCACGTGCTGAGCGGCTAGTACTCTGTGGTGGTGAACCCGTTATTAAAGAACAAGCTTCCTAGGACTACCAAATCAGTTTTGGTGtgaaaacacacaattatacagTGTAGCAATTATGCCTCCTCTGGCATCAGATTAAAtctacaaataaacattaagaAAATCTACCATACCGATGAGGCCCCCAGGAGCAGCGTACTGCAGGTCATTGTGCTCTGCAAACAGCGAGACAATTTTGGAGAAGATGGGCTTGCACATGAGCTTCCCCTCGTGGTCTTTGGACACAATACCTGGCCTCACCTCGATCTCCTGACCCACCT
>TU16943
AGTGGCAAAGACTGGCTGGCCAGTGGTTGTCCTGTAACCATGGCTGACTGACCAGTCCCCCTGCGCTGCTCTCACCTTGGCTGCCTTCTTGTCGCCCTCAGTGCGCACACCCAGCAGTCTGCGCAGGAGGAAGTAGGAGATCTCCAGCTCGGTAAAGATCTCGGGGAGTGCGCCCACAGCCCCCAGGACCTGGCCCACCATACGGTCCGCCCGGCACAGTGTGGGATCGATCTTCGTGCCATACCGATGAGGCCCCCAGGAGCAGCGTACTGCAGGTCATTGTGCTCTGCAAACAGCGAGACAATTTTGGAGAAGATGGGCTTGCACATGAGCTTCCCCTCGTGGTCTTTGGACACAATACCTGGCCTCACCTCGATCTCCTGACCCACCTTCAGCACTCCTTTCAATATACTGCCTCCAGCCACTCCGCCCTTCAGGTCGTCCACCTCACAACCAGGCTTGTTCACATCAAACGACCGGATCACTGGATGGAAAGGGACACATTACACCAGACCACAAACACCACGATCACCGACAGAAGCAGTGCATTAGGAGAACACTACTGAATTCATTATGTAGAGATGGGTAAGatttcattttacaatacagCATAACAAAGCCACaatcacccccccccacccccttacaAAATGGTCACCCATTAAAGGGTACCTGTAGTCTGAGACAGATAAACCATATAAAAGTATAGAGATTTGACAGTCCATGTAAACAGTGACACCGGGGCAGACTGGACTTAAACGATGTGCATCTCAAGCTAAATGCAAAGGTGAGTCTTGCACATGCTTGTGCTGCATGTCAGCGCAGTGACAGGGCCCGGACTGTACCGCACCGATGAGGCGTGGCTCGGATATGAAGTCCCGGATAGGCACGGGGATCTTTTTCACGATGTACTCGCACACCACCTCGATGTTATACTTCAGCTGCGCCGAGATGGGGATGATGGGAGCTCCCTCCGCCACAGTGCct

Function

symbol description
eif2s3 Predicted to enable translation initiation factor activity. Predicted to contribute to tRNA binding activity. Predicted to be involved in formation of translation preinitiation complex and positive regulation of translational fidelity. Predicted to act upstream of or within translational initiation. Predicted to be part of eukaryotic translation initiation factor 2 complex. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in MEHMO syndrome. Orthologous to several human genes including EIF2S3 (eukaryotic translation initiation factor 2 subunit gamma).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16941 True 1705 lncRNA 0.63 2 20342074 20344085
TU16943 False 987 lncRNA 0.58 3 20343424 20345072

Neighbor

gene id symbol gene type direction distance location
AMCG00016458 NA coding upstream 10299 20328705 ~ 20331775 (+)
AMCG00016457 NA coding upstream 25320 20308979 ~ 20316754 (+)
AMCG00016448 abcg1,LOC108426925,LOC107684024,LOC107561305,LOC107677096,LOC107755138,LOC106612441 coding upstream 215790 20104916 ~ 20126284 (+)
AMCG00016449 NA coding upstream 277452 20059343 ~ 20064622 (+)
AMCG00016450 NA coding upstream 327165 20010296 ~ 20014909 (+)
AMCG00016456 klhl15,LOC107727232 coding downstream 5576 20350648 ~ 20353506 (+)
AMCG00016469 NA coding downstream 35541 20380613 ~ 20392489 (+)
AMCG00016467 NA coding downstream 63231 20408303 ~ 20419818 (+)
AMCG00016466 pdha1a,LOC107599948,LOC107726384,LOC107672749,LOC107592287 coding downstream 81421 20426493 ~ 20434211 (+)
AMCG00016465 NA coding downstream 90695 20435767 ~ 20440084 (+)
G13681 NA non-coding upstream 22735 20319017 ~ 20319339 (+)
G13662 spcs2,LOC107677086 non-coding upstream 52240 20287075 ~ 20289834 (+)
G13659 NA non-coding upstream 86054 20219443 ~ 20256020 (+)
G13599 NA non-coding upstream 309158 20031493 ~ 20032916 (+)
G13593 NA non-coding upstream 323988 20014944 ~ 20018086 (+)
G13685 NA non-coding downstream 48439 20393511 ~ 20403506 (+)
G13700 prdx4,LOC107734341,LOC107665442,LOC107654298,LOC105904605 non-coding downstream 79065 20424137 ~ 20425842 (+)
G13791 NA non-coding downstream 269673 20614745 ~ 20617697 (+)
G13798 NA non-coding downstream 301763 20646835 ~ 20652272 (+)
G13799 NA non-coding downstream 308598 20653670 ~ 20655615 (+)
AMCG00016429 lamtor1,LOC106581407 other upstream 462349 19875056 ~ 19879725 (+)
AMCG00016407 NA other upstream 1868385 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 2742493 17562418 ~ 17599581 (+)
G13012 NA other upstream 3220142 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 3856071 16484355 ~ 16486003 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 1437034 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 3521195 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 3592979 23938051 ~ 23945024 (+)
G14057 NA other downstream 3734945 24080017 ~ 24110182 (+)
AMCG00016537 NA other downstream 4134634 24479706 ~ 24561807 (+)

Expression


Co-expression Network