G13700 (prdx4,LOC107734341,LOC107665442,LOC107654298,LOC105904605)


Basic Information

Item Value
gene id G13700
gene name prdx4,LOC107734341,LOC107665442,LOC107654298,LOC105904605
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20424137 ~ 20425842 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU16972
CAGGCCAGGTGTGTGAACTGCGAGTCCACAGAGCAGGCGACAACCTCGGCGTTGATGGCTCTGAACTCCTCCACCCGGTCACTGAACGCGATGATCTCAGTGGGGCACACAAAAGTACTGCcaaccgaaaaaaaaaaacatatgagcCAGCTGTGCAGGTTCAATACTTTTTTAGagcattgtatttaaaaaaaaaactatgtagAGTGCACTGCTcagcacacacaatacacaagaGCATTTATGATtcatgtgaaattatttttaacattggaTAACTGGAATCAtcttgaaagaaaatacattatgttCTAGAGGACAACCTAAAATCGTATCATCTCTAGTGTAAAACCTAACATGGCCTGTGCAATGTCAAGAAGCTTGTTGATCTGAAGGGAAAATTAGGTGCTCACAAATCCAGAGGGTAGAAGAAGAATACAAGGTATTTCCCTTTGTAATCCGACAGCTTCAGGTCTTTAAACTCTCCCTTGATGACAGCTGTTCCCTCCCAGTGTGGAGCGGGTTTTGAAATCGCCTTGCTGAGGTGCAGGGAGTGATCGGACACGGGCACCCGGAACGCCTCCCCGGGGTACACATGCCCCCCTGCGTAGTTATAGCATTCCTGCTCCTTTTTGCCGCTTGCAACGTGGAGGAGCAGTAAAATTGCCCAGCATAAACCGACGATGCCCGCTGTTACTCTGCCGTCCATTTCCCCGGATTGCGCTCCGCACGTCCCTACAGCGCCTGCGCCGACGATACCGCTGCACGGGGGCGCGCACGTTTAAAGCGGCAGTGTGGCAC

Function

symbol description
prdx4 Predicted to enable thioredoxin peroxidase activity. Predicted to be involved in cell redox homeostasis; hydrogen peroxide catabolic process; and response to oxidative stress. Predicted to be active in cytosol and endoplasmic reticulum. Is expressed in several structures, including alar plate midbrain region; digestive system; hatching gland; optic tectum; and polster. Orthologous to human PRDX4 (peroxiredoxin 4).

NR:

description
peroxiredoxin-4 precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16972 True 801 lncRNA 0.44 2 20424137 20425842

Neighbor

gene id symbol gene type direction distance location
AMCG00016467 NA coding upstream 4319 20408303 ~ 20419818 (+)
AMCG00016469 NA coding upstream 31648 20380613 ~ 20392489 (+)
AMCG00016456 klhl15,LOC107727232 coding upstream 70631 20350648 ~ 20353506 (+)
AMCG00016458 NA coding upstream 92362 20328705 ~ 20331775 (+)
AMCG00016457 NA coding upstream 107383 20308979 ~ 20316754 (+)
AMCG00016466 pdha1a,LOC107599948,LOC107726384,LOC107672749,LOC107592287 coding downstream 651 20426493 ~ 20434211 (+)
AMCG00016465 NA coding downstream 9925 20435767 ~ 20440084 (+)
AMCG00016468 NA coding downstream 22508 20448350 ~ 20466290 (+)
AMCG00016475 casr coding downstream 52213 20478055 ~ 20482996 (+)
AMCG00016474 NA coding downstream 73456 20499298 ~ 20502189 (+)
G13685 NA non-coding upstream 20631 20393511 ~ 20403506 (+)
G13682 eif2s3,LOC107727229,LOC107686712,LOC107741782 non-coding upstream 79065 20342074 ~ 20345072 (+)
G13681 NA non-coding upstream 104798 20319017 ~ 20319339 (+)
G13662 spcs2,LOC107677086 non-coding upstream 134303 20287075 ~ 20289834 (+)
G13659 NA non-coding upstream 168117 20219443 ~ 20256020 (+)
G13791 NA non-coding downstream 188903 20614745 ~ 20617697 (+)
G13798 NA non-coding downstream 220993 20646835 ~ 20652272 (+)
G13799 NA non-coding downstream 227828 20653670 ~ 20655615 (+)
G13873 NA non-coding downstream 1496311 21922153 ~ 21922461 (+)
G13892 NA non-coding downstream 1810329 22236171 ~ 22236399 (+)
AMCG00016429 lamtor1,LOC106581407 other upstream 544412 19875056 ~ 19879725 (+)
AMCG00016407 NA other upstream 1950448 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 2824556 17562418 ~ 17599581 (+)
G13012 NA other upstream 3302205 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 3938134 16484355 ~ 16486003 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 1356264 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 3440425 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 3512209 23938051 ~ 23945024 (+)
G14057 NA other downstream 3654175 24080017 ~ 24110182 (+)
AMCG00016537 NA other downstream 4053864 24479706 ~ 24561807 (+)

Expression


Co-expression Network