G13789


Basic Information

Item Value
gene id G13789
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20595329 ~ 20598765 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU17088
tattgttttataatgccTTTTGTTAGACCCTTCTACAAGCCTGAAACATTTGTGTATTAAAACAGagtaaaatgcaaaaagtaatcctttatttaattttttgtaaagGCTTACAGCGGGTGCATACAGTTACTGCAAATAGACTCCACTTTGAGGCAccaaaaaatgttaatgattacaatattaacattttgtttttacaattgaGAAACCTTCATAAACACACAAGACATGATTACACAGCAGTAAAACCTATTCAGATTccaatattaatatacagtttttttgttgAAATAGCCAAAGATACATTtggctgaaagaaaacaaagcaaaaaaaaaaaaaaaaagtattacaaattcCTGTTACACATGATGGGCCTGTTTCAGGGTCGTTTACAGCAGTAAGTACATTTCCGCTGCTTTGCACAAGATTTCCATAAAGCCTTTAGCCTTGGCACAGcctaaacaaagaaacaaaatctcaaCAGACAAACCCAAGACTATCAGTCAGATTCTGATCGCTTTTGAACAGCCTGGGTCGCAGTGCATGATTCGCTTATTCATAGGGAACTTTGTGGAAGGGGGTCAGATTTAAAGTCTGCTTCAATCTTCACTACATCCCCCgtctgaaaaagaaatgagGAAACACTTCAACTTCCCATAAAACATTCACTTCTCCTTCATTCCGCACagtcctttttgttgttgttattaatcacatttaaacatgtttttttttaatgatcttgtaatttaaataagcttcgtaacagtttttttttttttaattaaaattgcctACCTcagatttgaattaaataattggaGAATTTGCATGACCTACTGAGAACACCTACGCAGGACAATCAGCATAATTTCAAGCAGCTGTTCTTTAATTGAAGTGCTAAATTGCTTCCAATCAGCATAATGTAACCCCACCCTGAAAGaccagtaaaaaaatatataattataataaaagaaatacacaatcaCTTTGTTCCTCTGTGCCAATGGAGATCCTTTGGCTTTAGACCCTTTCTGTCTCGAAACTACTTCTAGTATCTTACGCCATCACGCCGAGTGTCAGACAGGCCCCTGCCATCTCcgtgttcaaattaaatctgaatcTGAAGATACATACATTCCCTGGCTTTCCCTTAATCTTCTACACATAGTCCTGCCATTCTGATATTCTTTCCTATATACATGTTCTGTAACCTTTCCAAGAAACTTGTGAATTGTAATTGTGAGTGTTTAAGCTTCCTGGAAATACTTGAGCTTTAAAGTGCTTTGCGTTGACCATCCTTGCTATGCAATCTATATATAGCTATTATTCTGTGATTTTACAAAACCCCATTGTAACAGGCTTACAGTAAAACACACCCATTGCTCGCTGACTACAAATTGATCTATTGTGCAGTAGTACAACATTAGACTATAATATCAACACAAACAATTGTTGGGACAGTAACTGAAAActtttatgttatatattttattcacttcTTAATTCTGTATCCAATTATCATGGGCAAATGAACTTTCAATTATAATCTACTTGTATCTACATCACACTTTCAATCTCctcaatatatacacacataactcatacacacactcgAAACTCCATCCTTAAAATCACCCCACTCTGCTTTATCTTGTTTATACCAACAACGGTTTGCAGTATTGGCCAACAGGGGGCAGTATCCACACACCAGGTAAAACATCAACCTGTAAGGCTTTGAATTTAACTGTTCTTGGTCTGTTTACTTCAAAGTTGTTCCTATTCAGGCCTTTACTTATGCATGTCCTCATTGTTTGCCATTTCTACAACAGCCTGTGGGTGCAGAGTGACCTTGTTTTGACTTCTGAACCCTTGGCTTACGACCTTTTTCTCAAATTCCCATCTTCCATCACTATTCATCCCACCACCACACCTGCccagtgaaaatatatatacttccTGTTAACTGCAATCCCACTTAGCCAATAGCTACTGTCTTCCTTAAAACAGAGGTCCAGTTGCCCAGTCCCCTACATATGGATTTAGAGCAAAAATGTAGTCAAACAAGCAAATAGAGTTCATTTAAGAACATGATTGATGCTTTCGGGGAAATTATGTTAAGCTAACTCATTTCTTTGTCGCGCACATCTGGTTTGAAAAGAGGAAGCAGGGGACAGAAAGCTTTGTGTGTGATAAACTCTGTAAGCGGTCGCTGTGGAAACTCCGTCGGTGCTGAGTTCTCACAACACTTCAGTTCCAGACCACGCTAGTGCACCTTCCCAGCAGATGTCACTATCCATAAaactatgtaaatacaaaataataataattataataataaaatacagaaaagtcaTATTAATACAGAAGGGCATTGCTGCCAGATTgggaatataaaacaaaaaatatatcattacatAATACAAACACTAGCAGGAAATAACAGTAAACAGAGGcaaaagtaaaattaacaatCACGTCTGATGTGGCAAACATTGAGTAGTTCTGCTGTGTTTAAGACTGGTCTGGAATGTTTAGCCCCAATGTGTCAGTTCCTCTGACCTCCTTGTGCACAGTCCTAAGTGTCTGACACATGTGCAATGTCTTCCAGCTTCATGCTTGTCAAGTAATGTTATGATCTGAGTTGCataataattcattatttctcTGACCTTCATGATCTTTGTTTCTTGtaattatatcatatttatCCCATAACACACCTAGCGGAAATGCTATTCTGTATTAATTTAGAGCaggacaatatatatatatatatatggctttacatttaaaatatgtatatttgtcttACGAGACCCTATAGGCCTGAATATGAAGATGTTTGCCCAAATTGGTACCAATTCTGTGAAgttcaaaaaactaaacaaaataaagaaaaaagcttaTAGTACATATCCTCTTATATCCACATCTctactgtcttatgttctttgccagttttaaaaattagaaaatatttatttaaacaatggtGCAACTGTTACCTTGCAGGTAATCAATCTTGTATGGGCCGCCTATGGCATCACCTTCTGCCGTGCATGTAAAGTCCAGTCAGCCcagctacagtacagtgtaaGACTTGTGTAGTTCTCCTGCAGATAACTTTCTTTTGGCTTCTTAAAATTTAGTTTTGTGCCCTGCACTCTCATTTAGCTTAGATAAGCTAAACAAGTTCATTAACTGTGCTGAAACTGTGATTGTTTCTAAATATCCAGTTCATTTCACAGTACTGTCAAGTGTCAAGTCTAACACAGTAACATATGATTTTAACCTGACTGCACATAGCACCAGTTGCAGAGACCAACAAGGCTGATATTTCCAGTTTTACCAACATAAGGCTGATATCATAGAGGTTATTTGATAGGAGATCACA

Function

GO:

id name namespace
GO:0035162 embryonic hemopoiesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17088 True 3401 lncRNA 0.36 2 20595329 20598765

Neighbor

gene id symbol gene type direction distance location
AMCG00016476 NA coding downstream 71572 20517799 ~ 20523757 (-)
AMCG00016477 NA coding downstream 84861 20506848 ~ 20510468 (-)
AMCG00016471 NA coding downstream 148298 20441545 ~ 20447031 (-)
AMCG00016470 prdx4,prdx2 coding downstream 169579 20421954 ~ 20425750 (-)
AMCG00016472 sat1a.1,sat1,LOC107654323,LOC107734365,LOC107665519,LOC107591481,LOC107725087 coding downstream 189553 20401388 ~ 20405776 (-)
AMCG00016481 NA coding upstream 325215 20923980 ~ 20973210 (-)
AMCG00016483 NA coding upstream 388227 20986992 ~ 21012361 (-)
AMCG00016484 NA coding upstream 475329 21074094 ~ 21245418 (-)
AMCG00016485 igsf11 coding upstream 1090046 21688811 ~ 21709689 (-)
AMCG00016486 NA coding upstream 1312105 21910870 ~ 21921639 (-)
G13762 NA non-coding downstream 81925 20468246 ~ 20513404 (-)
G13766 NA non-coding downstream 103308 20486881 ~ 20492021 (-)
G13680 NA non-coding downstream 278750 20315742 ~ 20316579 (-)
G13615 NA non-coding downstream 590389 20003149 ~ 20004940 (-)
G13414 NA non-coding downstream 1336772 19258323 ~ 19258557 (-)
G13806 NA non-coding upstream 48071 20646836 ~ 20652268 (-)
G13812 NA non-coding upstream 162658 20761423 ~ 20761693 (-)
G13819 NA non-coding upstream 309153 20907918 ~ 20908118 (-)
G13860 NA non-coding upstream 1183299 21782064 ~ 21782296 (-)
G13861 NA non-coding upstream 1186479 21785244 ~ 21785716 (-)
AMCG00016453 NA other downstream 459782 20128908 ~ 20135547 (-)
G13367 NA other downstream 1489948 19091239 ~ 19105381 (-)
AMCG00016376 NA other downstream 3053987 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 3328582 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 3725327 16866318 ~ 16870002 (-)
AMCG00016479 NA other upstream 17744 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 67377 20666142 ~ 20683024 (-)
G13962 NA other upstream 2856327 23455092 ~ 23455811 (-)
G13969 NA other upstream 3100384 23699149 ~ 23700255 (-)
AMCG00016504 NA other upstream 3242297 23841062 ~ 23862739 (-)

Expression


Co-expression Network