G13798


Basic Information

Item Value
gene id G13798
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20646835 ~ 20652272 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU17100
tcGCAATTCAGTAAAGTACAGGAAAGTACTAGAGTTTTTATTCCTTCATATTCAAACTTCACAAACAGCGTGAACTTGTACAATACCTCAGAAAGTGaaacttacaaaaaaaagtgctgGTAACATTTACAAAAGAATCTTCATCCTTACTTAGCAACAATCAGTTTATTCTTCcacacaaagttttttttttatttttatttttttttagtctttTGTATTAAGGCTTAATACTTCTGTATAAAGTATATGCAAGATAAGTCTTCACAGTATTTCGAAAAAAGTCACAATAATATGTAACATAATGAAGCATTTTACGgctattttctttataataacaaatacacatcACAGGTAAATATATGTGAAAATACAGGGCTAACTTTAAATGGCAAGTTAGGATACTGTCGACTAAAATAAAactggtattttttatttttattttttttcatttttaaagcacttGAAAGAAAGGTGTACATTATATATCATAGAAATGACATACCATTGTTATAACTAAAAGCAGagggaaaatgaaacaaaactgaaacaaaaaaaacaacgtGGAGATCGCCTCAAAAACTTTGGCACatccctttaaatatttttataaaatagatAAAGGTTTCTTCTTAAATTATATGCAAGGCAGTTTAGCAACACAGGCATAATGCTGGACAGGAACTGAAACACAGTAGACTTAAAACATACTGTATAGTAAGGTGCTAAATGAGAGATTAGAGTGCCAATCCTCCATTCAGATCAGCACGGATAAGGTGCATTTAAAGTCTCATGTAGCTTTTATGCttttttctagtttatttcttttttttttctctgaagaaaaattaacaaacaaagaaacaaactaacaaaaaaacagaaaaagtggCCAATAGTCTCAAGGCGACCTCTTACATCTTCCATAGATAGTTTGTGttggaaacaaaaagaaaatgaaacatgctCATTCTTTTTCCGTGTCTTTTACCACAACCGCTCCATCATGGCAAGTGgaatcattaaatatataagatTTCCTTTTGTCTTCATTCTAATAATTTTATGTTGtcgttgtttttattttggatttttggagaaaggaaaaaaaaaaaatcactgcaaACCTGTGGATTGTGAGGGAGATAGGAAGATCTCGTACCCAAAAGCAGCACGGAATACAGGGGAGATATTTCAGAGGATTTCATGAGGGATCAACAGATCGGTTTCCAGAGATTCCCTGATCTCGATCTTCCCGATTGACCTCAAATAGTTCCACATCTCTAGAATGTTATCCGTAAAAAGCTTGGCTTCTTCGATAACAAATACTGCTAAAACATTTACTGGAAACACCATTGCCTGGAATGGCTTAAGCTTTTcaactgtttgtgtttgtgtttgtttaacaaGCTTAGCAAGAAATTATCAGAAGGCACATACCTATGCTTCCTCTATTGTGTGATACGTTTAGACACACAGCaccatatttttttcaatgaatACCCCAAAGcggttaaataataataataattttctatattattactatttcctcattgctcttctctctctctacatatatagctttatatatatcatgtttGTGTCTGGTGCTATACACGATTTGTTTGGATGCTTCGAcgtttatgtctgtgtgtgtgtatctgtgtgtgggtgtggaaTCATGCAATTCACATTCCTTTTCGTTCAAATTTGTCAGTGTTCATCGCTCTTTATATACGTAGTGTGCAATGAGGCTTTGATTTCCCATCCATGTGCTAAAAATATCACCAgaggaaacacagaaaaaaggaGATCAAAAAAAAATTTGAGCACATGTGCCCAGGCGGGATGATTTCATCTTCCGACtcagacacatttgttggtTTACTTGAAAGTTACCAAGAAATCAGGACTGTGACAGCTTAGTACACATCGACTAAGAAGATGAAATCCATCTAAAATATCCCCTTTTACACTTCATTACCTGCGTACACagacagttttctttctttcttgttttgtcttttattttgttttgagaatGTCTACTTTCTGATGTTGTGTATTGCTATTGATCCATGAAACCAAGTTGACTTTAGTGCAaatctcttttctgttttgagaAGTGAAAACCAGCTCTGCACTGATCACAAccttattttacaaatacaaatggagGTTACGTCAGAGCTTGATTATAATGTTCTCCTGAAAAAACAATGGATATTGACATAGTGGTAATGCAAAATTTCAAgtcttttataaatatatatatttcttacattttatgttCCTCAATTGTTTGATTGTAATTGAGTGGTTTCCCTTTTTAGTACAGAACACCaagatagaaatagaaaaatttgttttctttgggacagtgatcattttttttttttttttttttttttacataaacctTCAGAACAGGGGCTCAGTATCCAAATGATAATTCCTGCAACCCTCTGGACATACTAAATTTCTTCTCGTAAATCAGCTCAGCATCTGTTTGCTAAAAAGGGTGAGCCTGGTCttcatatgtatttttgaaaagacaagaaaagacaattacatttcagctAATTTTTTTCAGAGGGTGGAAATCGGGTGACAGCCATTCAGAGGATCTTATGAATCACATTCACTTTACCTCTCAGGAAACCATAACTGTCCCGTTGTGAGTAAATAAGTGTAAGAGACTGAATTTCGTGCTGCTTGTTTTCTCCTATAATTGTCCTTAAACTCTACATATCAGTAACACACTCACAGTCCAGTGTCTTTGACAATGAGAGTATAAAACGCCCTTGTATAAAAAATCCCCTTATTACCTATCTCAAAACAGCAgtcattacattacaaactttgtttttcatttgtaacaataataataaaaaaagacaataaaaccaATTTAGAACACACATGAAGAATTAGAGTTGAAAAAACATTACTGCAGCATATCCATAAGggcaaacttgtttttttttaatcttaaattcCTTTCACCTAAACAGCTCAAATTCcatcgtttttttttcctgtttttttgttgttaacattttacattaacttATAAAATAGTATGCCAATTAAAATCAGACAACAAACCAACTcggaaataaaatgttcaaaacagtATAAAACGTTGAATCATTTTGATAAAAAGGGCATCGTTTGCATAAAATATGGAAgatgtggaaataaatattaaaatgttcctttcttgaagaaaagatgaaaaaaaaaaagcaatgacaAAACAACTTTCAATACTACTGGATTGTATTCAGGGTACCCTGGAATATGTGGTTTGTCACTGTAGGAATTGATTCTGCAATGTGTTAAAGAAGCAGACACTGATCATCGAACCTCTCTCAGTTCCATGTGCGGTACATGTATACAAATTGAATGTCAGGAAGCAGTTTTGGAACAACTAAACAAATTGTCAGAAAAGTATATTGATGCTTAAATATTCGAAATAAATTACCACCTTACCACTAAAAGCCATTTCTTTTCAAACAAATTGACGACAATATGTTCACTGATATATTCTGTGAAGCATACCCCTCAAGAACAGACGCCAACACTAACTGGAAATGAGACCGTGCTTCACCATAAAGCTAAATATTCTTTATTGTACATCGAGATTCTTAAATACTGTTACATTCTGCCTTTGATATGAGGAAAATATCTGGTTTGTCTCTAATAAAAGCCCCtagacttaaaaaaatacactaccTACAGAAAACACTTGTGCTATCTAGAAATAGGGATTTTGGTCCTTAGAGGTACAATGCTGACACAAAACGATGCcaccaaaatatatacatatattatttttgatgtCAAGCTGTCATTAGCGTGAAACACTGTAACAATGCTAGATTACATTTTACGCGGGcctcagaaacaaaatgtacatttataacaaGGGCATGgttttaaaagaatataaatTCACGTTCAGCAGTAATAGGTTAATATATAATGGCTATAGTGCGGCCGGAATCTTGGCTCAATTTATGTCTCCGTTGTGGATCTGAACTTGGATTAATAATGTCTTGGGtcattataacattatttgttttcttttcctagCTACTAGAACTAAACGAAACAGTAACACATTGCCTTAACCAATTAGTATGTCTGTGCAAACAACAAAGTTCAATCCTTTTCAAAGTTCAAGTTCAAAGTGTGAATCCTTTTAATTGAACTGCCCAGGGAACACTTTTGTATGGAGAGAATTTAGTCATGGGAGTATCGGTAGCTAGAGGAAACAGGACAACATTCagcacagaagaaaaacaattgcaCATCGCGGGTTTGCTTGGGAGATGTTTCACCAATCCAGTGTGTTCCATTGATACAAAACTAGAAACACCTCGAGAAAACTACCACAACCTTCAAATGAAACAGAGCgcgacaataaaataaaataaaaaggcagaccaaacaaaaatattggtctattacaaaacaacagcaactgcAAGGGGAAAGAGTGCAAAGCATGTTTAGAAACATACgaagaagaacaaaaagctATTCAAATAGTCACTAATCTGAAATAAACTGTAGGCAAAGTAACCAATAATTATGCTACATTTACAATCATCTAAAAGTCATAACATGCTATTGTCTTCATATTACTGGTAATacatatgcttaaaaaaaaaaaaaaaaagatttgtttgtttaaaaaaaaaattgtaatttggTCTACAGtagttaaataaacacaagtatTAAACTACAGTGTTCTAATAGTGTTTATGTTTAGCGTTGaacaatatgaatacatttctgGAGAACTTGAATCTGGCTTCTCTGTAAAGTGAACGGACACAGTCCACTTTTGTTTCCTTCCCGAAAGATCGAACTGCAACTACGGACACTAGCTACACAaccaacaaaagaaagaaatattaaccataaaatgcattgtggtcAAGTGTCTCCCGATGAACACAGTTTCAATAAGATTTAATTATTAGATTCATAGGTTTTCAAAGGGGGAACTGCAAGCTTTCACACTCTGTCAACAATTCAATTTACAGTGTGGTTCAAAGCTGTGTGGCCACAGAGTGCTGATACAATAGAAACCTATTCCCAACAGACAACAGAATCCCACAGATGGCTGGGAGAGCTGAGCAGAAGGATCTCTTCATCTGTGGGTCACAAAAATAGCTTTCAAGCAGTGTTGTTATTGTAATCGAAAATAATTATGACCTTACGTAGcctgagggggaaaaaatatataaaaagggcAGTGTTTCATCCAAGACACCCATCCATTCACCTCTGAATGGAAGGCTTTTGCGAATTCCCATAGTTGCAGCACAAAGATCCCACATTGCAAATTTCTATCCCTCTCACTTCAGTGCTATTCCTACTCAATACAAAAGGGTTTTGGAAAACAGGAAGCTGACTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17100 True 5438 lncRNA 0.43 1 20646835 20652272

Neighbor

gene id symbol gene type direction distance location
AMCG00016478 NA coding upstream 51910 20581946 ~ 20594925 (+)
AMCG00016474 NA coding upstream 144646 20499298 ~ 20502189 (+)
AMCG00016475 casr coding upstream 163839 20478055 ~ 20482996 (+)
AMCG00016468 NA coding upstream 180545 20448350 ~ 20466290 (+)
AMCG00016465 NA coding upstream 206751 20435767 ~ 20440084 (+)
AMCG00016482 NA coding downstream 220121 20872393 ~ 20876476 (+)
AMCG00016489 arrb1,LOC108440366,LOC108277835 coding downstream 1209516 21861788 ~ 21904114 (+)
AMCG00016493 NA coding downstream 1253110 21905382 ~ 21906361 (+)
AMCG00016495 NA coding downstream 1281882 21934154 ~ 21935071 (+)
AMCG00016492 NA coding downstream 1338134 21990406 ~ 21991423 (+)
G13791 NA non-coding upstream 29138 20614745 ~ 20617697 (+)
G13700 prdx4,LOC107734341,LOC107665442,LOC107654298,LOC105904605 non-coding upstream 220993 20424137 ~ 20425842 (+)
G13685 NA non-coding upstream 243329 20393511 ~ 20403506 (+)
G13682 eif2s3,LOC107727229,LOC107686712,LOC107741782 non-coding upstream 301763 20342074 ~ 20345072 (+)
G13681 NA non-coding upstream 327496 20319017 ~ 20319339 (+)
G13799 NA non-coding downstream 1398 20653670 ~ 20655615 (+)
G13873 NA non-coding downstream 1269881 21922153 ~ 21922461 (+)
G13892 NA non-coding downstream 1583899 22236171 ~ 22236399 (+)
G13894 NA non-coding downstream 1677791 22330063 ~ 22330299 (+)
G13902 NA non-coding downstream 1826064 22478336 ~ 22478597 (+)
AMCG00016429 lamtor1,LOC106581407 other upstream 767110 19875056 ~ 19879725 (+)
AMCG00016407 NA other upstream 2173146 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 3047254 17562418 ~ 17599581 (+)
G13012 NA other upstream 3524903 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 4160832 16484355 ~ 16486003 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 1129834 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 3213995 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 3285779 23938051 ~ 23945024 (+)
G14057 NA other downstream 3427745 24080017 ~ 24110182 (+)
AMCG00016537 NA other downstream 3827434 24479706 ~ 24561807 (+)

Expression


Co-expression Network