G13806


Basic Information

Item Value
gene id G13806
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20646836 ~ 20652268 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU17108
TCAGCTTCCTGTTTTCCAAAACCCTTTTGTATTGAGTAGGAATAGCACTGAAGTGAGAGGGATAGAAATTTGCAATGTGGGATCTTTGTGCTGCAACTATGGGAATTCGCAAAAGCCTTCCATTCAGAGGTGAATGGATGGGTGTCTTGGATGAAACACTgccctttttatatattttttccccctcaggCTACGTAAGGTCATAATTATTTTCGATTACAATAACAACACTGCTTGAAAGCTATTTTTGTGACCCACAGATGAAGAGATCCTTCTGCTCAGCTCTCCCAGCCATCTGTGGGATTCTGTTGTCTGTTGGGAATAGGTTTCTATTGTATCAGCACTCTGTGGCCACACAGCTTTGAACCACACTGTAAATTGAATTGTTGACAGAGTGTGAAAGCTTGCAGTTCCCCCTTTGAAAACCTATGAATCTAATAATTAAATCTTATTGAAACTGTGTTCATCGGGAGACACTTgaccacaatgcattttatggttaatatttctttcttttgttggtTGTGTAGCTAGTGTCCGTAGTTGCAGTTCGATCTTTCGGGAAGGAAACAAAAGTGGACTGTGTCCGTTCACTTTACAGAGAAGCCAGATTCAAGTTCTCcagaaatgtattcatattgttCAACGCTAAACATAAACACTATTAGAACACTGTAGTTTAatacttgtgtttatttaactaCTGTAGAccaaattacaattttttttttaaacaaacaaatctttttttttttttttttaagcatatgtATTACCAGTAATATGAAGACAATAGCATGTTATGACTTTTAGATGATTGTAAATGTAGCATAATTATTGGTTACTTTGCCTACAGTTTATTTCAGATTAGTGACTATTTGAATagctttttgttcttcttcGTATGTTTCTAAACATGCTTTGCACTCTTTCCCCTTgcagttgctgttgttttgtaatagaccaatatttttgtttggtctgcctttttattttattttattgtcgcGCTCTGTTTCATTTGAAGGTTGTGGTAGTTTTCTCGAGGTGTTTCTAGTTTTGTATCAATGGAACACACTGGATTGGTGAAACATCTCCCAAGCAAACCCGCGATGtgcaattgtttttcttctgtgctGAATGTTGTCCTGTTTCCTCTAGCTACCGATACTCCCATGACTAAATTCTCTCCATACAAAAGTGTTCCCTGGGCAGTTCAATTAAAAGGATTCACACTTTGAACTTGAACTTTGAAAAGGATTGAACTTTGTTGTTTGCACAGACATACTAATTGGTTAAGGCAATGTGTTACTGTTTCGTTTAGTTCTAGTAGctaggaaaagaaaacaaataatgttataatgaCCCAAGACATTATTAATCCAAGTTCAGATCCACAACGGAGACATAAATTGAGCCAAGATTCCGGCCGCACTATAGCCATTATATATTAACCTATTACTGCTGAACGTGAatttatattcttttaaaacCATGCCCttgttataaatgtacattttgtttctgaggCCCGCGTAAAATGTAATCTAGCATTGTTACAGTGTTTCACGCTAATGACAGCTTGacatcaaaaataatatatgtatatattttggtgGCATCGTTTTGTGTCAGCATTGTACCTCTAAGGACCAAAATCCCTATTTCTAGATAGCACAAGTGTTTTCTGTAggtagtgtatttttttaagtctaGGGGCTTTTATTAGAGACAAACCAGATATTTTCCTCATATCAAAGGCAGAATGTAACAGTATTTAAGAATCTCGATGTACAATAAAGAATATTTAGCTTTATGGTGAAGCACGGTCTCATTTCCAGTTAGTGTTGGCGTCTGTTCTTGAGGGGTATGCTTCACAGAATATATCAGTGAACATATTGTCGTCAATTTGTTTGAAAAGAAATGGCTTTTAGTGGTAAGGTGGTAATTTATTTCGAATATTTAAGCATCAATATACTTTTCTGACAATTTGTTTAGTTGTTCCAAAACTGCTTCCTGACATTCAATTTGTATACATGTACCGCACATGGAACTGAGAGAGGTTCGATGATCAGTGTCTGCTTCTTTAACACATTGCAGAATCAATTCCTACAGTGACAAACCACATATTCCAGGGTACCCTGAATACAATCCAGTAGTATTGAAAGTTGTTTtgtcattgctttttttttttcatcttttcttcaagaaaggaacattttaatatttatttccacatcTTCCATATTTTATGCAAACGATGCCCTTTTTATCAAAATGATTCAACGTTTTATactgttttgaacattttatttccgAGTTGGTTTGTTGTCTGATTTTAATTGGCATACTATTTTATaagttaatgtaaaatgttaacaacaaaaaaacaggaaaaaaaaacgatgGAATTTGAGCTGTTTAGGTGAAAGgaatttaagattaaaaaaaaacaagtttgccCTTATGGATATGCTGCAGTAATGTTTTTTCAACTCTAATTCTTCATGTGTGTTCTAAATtggttttattgtctttttttattattattgttacaaatgaaaaacaaagtttgtaatgtaatgacTGCTGTTTTGAGATAGGTAATAAGGGGATTTTTTATACAAGGGCGTTTTATACTCTCATTGTCAAAGACACTGGACTGTGAGTGTGTTACTGATATGTAGAGTTTAAGGACAATTATAGGAGAAAACAAGCAGCACGAAATTCAGTCTCTTACACTTATTTACTCACAACGGGACAGTTATGGTTTCCTGAGAGGTAAAGTGAATGTGATTCATAAGATCCTCTGAATGGCTGTCACCCGATTTCCACCCTCTGAAAAAAATTagctgaaatgtaattgtcttttcttgtcttttcaaaaatacatatgaaGACCAGGCTCACCCTTTTTAGCAAACAGATGCTGAGCTGATTTACGAGAAGAAATTTAGTATGTCCAGAGGGTTGCAGGAATTATCATTTGGATACTGAGCCCCTGTTCTGAaggtttatgtaaaaaaaaaaaaaaaaaaaaaaaatgatcactgtcccaaagaaaacaaatttttctatttctatcttGGTGTTCTGTACTAAAAAGGGAAACCACTCAATTACAATCAAACAATTGAGGaacataaaatgtaagaaatatatatatttataaaagacTTGAAATTTTGCATTACCACTATGTCAATATCCATTGTTTTTTCAGGAGAACATTATAATCAAGCTCTGACGTAACctccatttgtatttgtaaaataaggTTGTGATCAGTGCAGAGCTGGTTTTCACTtctcaaaacagaaaagagattTGCACTAAAGTCAACTTGGTTTCATGGATCAATAGCAATACACAACATCAGAAAGTAGACattctcaaaacaaaataaaagacaaaacaagaaagaaagaaaactgtctGTGTACGCAGGTAATGAAGTGTAAAAGGGGATATTTTAGATGGATTTCATCTTCTTAGTCGATGTGTACTAAGCTGTCACAGTCCTGATTTCTTGGTAACTTTCAAGTAAaccaacaaatgtgtctgaGTCGGAAGATGAAATCATCCCGCCTGGGCACATGTGCTCAAATTTTTTTTTGATCtccttttttctgtgtttcctcTGGTGATATTTTTAGCACATGGATGGGAAATCAAAGCCTCATTGCACACTACGTATATAAAGAGCGATGAACACTGACAAATTTGAACGAAAAGGAATGTGAATTGCATGAttccacacccacacacagatacacacacacagacataaacgTCGAAGCATCCAAACAAATCGTGTATAGCACCAGACACaaacatgatatatataaagctatatatgtagagagagagaagagcaatgaggaaatagtaataatatagaaaattattattattatttaaccgCTTTGGGGTattcattgaaaaaaatatggtGCTGTGTGTCTAAACGTATCACACAATAGAGGAAGCATAGGTATGTGCCTTCTGATAATTTCTTGCTAAGCttgttaaacaaacacaaacacaaacagttgAAAAGCTTAAGCCATTCCAGGCAATGGTGTTTCCAGTAAATGTTTTAGCAGTATTTGTTATCGAAGAAGCCAAGCTTTTTACGGATAACATTCTAGAGATGTGGAACTATTTGAGGTCAATCGGGAAGATCGAGATCAGGGAATCTCTGGAAACCGATCTGTTGATCCCTCATGAAATCCTCTGAAATATCTCCCCTGTATTCCGTGCTGCTTTTGGGTACGAGATCTTCCTATCTCCCTCACAATCCACAGGTttgcagtgattttttttttttcctttctccaaaaatccaaaataaaaacaacgaCAACATAAAATTATTAGAATGAAGACAAAAGGAAatcttatatatttaatgattcCACTTGCCATGATGGAGCGGTTGTGGTAAAAGACACGGAAAAAGAATGagcatgtttcattttctttttgtttccaaCACAAACTATCTATGGAAGATGTAAGAGGTCGCCTTGAGACTATTGGccactttttctgtttttttgttagtttgtttctttgtttgttaatttttcttcagagaaaaaaaaaagaaataaactagaaaaaaGCATAAAAGCTACATGAGACTTTAAATGCACCTTATCCGTGCTGATCTGAATGGAGGATTGGCACTCTAATCTCTCATTTAGCACCTTACTATACAGTATGTTTTAAGTCTACTGTGTTTCAGTTCCTGTCCAGCATTATGCCTGTGTTGCTAAACTGCCTTGCATATAATTTAAGAAGAAACCTTTatctattttataaaaatatttaaagggatGTGCCAAAGTTTTTGAGGCGATCTCCacgttgttttttttgtttcagttttgtttcattttccctCTGCTTTTAGTTATAACAATGGTATGTCATTTCTATGATATATAATGTACACCTTTCTTTCaagtgctttaaaaatgaaaaaaaataaaaataaaaaataccagtTTTATTTTAGTCGACAGTATCCTAACTTGCCATTTAAAGTTAGCCCTGTATTTTCACATATATTTACCTGTgatgtgtatttgttattataaagaaaatagcCGTAAAATGCTTCATTATGTTACATATTATTGTGACTTTTTTCGAAATACTGTGAAGACTTATCTTGCATATACTTTATACAGAAGTATTAAGCCTTAATACAaaagactaaaaaaaaataaaaataaaaaaaaaactttgtgtgGAAGAATAAACTGATTGTTGCTAAGTAAGGATGAAGATTCTTTTGTAAATGTTACcagcacttttttttgtaagtttCACTTTCTGAGGTATTGTACAAGTTCACGCTGTTTGTGAAGTTTGAATATGAAGGAATAAAAACTCTAGTACTTTCCTGTACTTTACTGAATTGCg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17108 True 5433 lncRNA 0.42 1 20646836 20652268

Neighbor

gene id symbol gene type direction distance location
AMCG00016476 NA coding downstream 123079 20517799 ~ 20523757 (-)
AMCG00016477 NA coding downstream 136368 20506848 ~ 20510468 (-)
AMCG00016471 NA coding downstream 199805 20441545 ~ 20447031 (-)
AMCG00016470 prdx4,prdx2 coding downstream 221086 20421954 ~ 20425750 (-)
AMCG00016472 sat1a.1,sat1,LOC107654323,LOC107734365,LOC107665519,LOC107591481,LOC107725087 coding downstream 241060 20401388 ~ 20405776 (-)
AMCG00016481 NA coding upstream 271712 20923980 ~ 20973210 (-)
AMCG00016483 NA coding upstream 334724 20986992 ~ 21012361 (-)
AMCG00016484 NA coding upstream 421826 21074094 ~ 21245418 (-)
AMCG00016485 igsf11 coding upstream 1036543 21688811 ~ 21709689 (-)
AMCG00016486 NA coding upstream 1258602 21910870 ~ 21921639 (-)
G13789 NA non-coding downstream 48071 20595329 ~ 20598765 (-)
G13762 NA non-coding downstream 133432 20468246 ~ 20513404 (-)
G13766 NA non-coding downstream 154815 20486881 ~ 20492021 (-)
G13680 NA non-coding downstream 330257 20315742 ~ 20316579 (-)
G13615 NA non-coding downstream 641896 20003149 ~ 20004940 (-)
G13812 NA non-coding upstream 109155 20761423 ~ 20761693 (-)
G13819 NA non-coding upstream 255650 20907918 ~ 20908118 (-)
G13860 NA non-coding upstream 1129796 21782064 ~ 21782296 (-)
G13861 NA non-coding upstream 1132976 21785244 ~ 21785716 (-)
G13884 NA non-coding upstream 1489685 22141953 ~ 22142185 (-)
AMCG00016479 NA other downstream 9876 20616509 ~ 20636960 (-)
AMCG00016453 NA other downstream 511289 20128908 ~ 20135547 (-)
G13367 NA other downstream 1541455 19091239 ~ 19105381 (-)
AMCG00016376 NA other downstream 3105494 17538034 ~ 17541342 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 3380089 17263601 ~ 17266747 (-)
AMCG00016480 NA other upstream 13874 20666142 ~ 20683024 (-)
G13962 NA other upstream 2802824 23455092 ~ 23455811 (-)
G13969 NA other upstream 3046881 23699149 ~ 23700255 (-)
AMCG00016504 NA other upstream 3188794 23841062 ~ 23862739 (-)
AMCG00016505 NA other upstream 3212313 23864581 ~ 23885258 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G142570 NA non-coding NC_056718.1 CM032087.1 27512412 ~ 27536935 (+)
mexican tetra (Astyanax mexicanus) G312583 NA non-coding NW_019172863.1 APWO02000063.1 1436800 ~ 1499232 (-)