G13873


Basic Information

Item Value
gene id G13873
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 21922153 ~ 21922461 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU17191
cttccccactagaggccaccaatgttcccttgccttttcctgctcccttcactgctttccttttctctctctgtcaattaacattcctccacacccttgtgcacttctgttcctgtcctttgttctcattggtcctgctcgtcttcctagtttctgctctcctttataaacccctcactgccctcactctgggcaaagtgttgtcagctctccctgcatcaccaagccttgttctccttgttctccttgttctccttgttctccttgttctccttgttctccttgttctccttgttctccttgttctcc

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU17191 True 309 lncRNA 0.52 1 21922153 21922461

Neighbor

gene id symbol gene type direction distance location
AMCG00016493 NA coding upstream 15792 21905382 ~ 21906361 (+)
AMCG00016489 arrb1,LOC108440366,LOC108277835 coding upstream 18039 21861788 ~ 21904114 (+)
AMCG00016482 NA coding upstream 1045677 20872393 ~ 20876476 (+)
AMCG00016478 NA coding upstream 1327228 20581946 ~ 20594925 (+)
AMCG00016474 NA coding upstream 1419964 20499298 ~ 20502189 (+)
AMCG00016495 NA coding downstream 11693 21934154 ~ 21935071 (+)
AMCG00016492 NA coding downstream 67945 21990406 ~ 21991423 (+)
AMCG00016491 NA coding downstream 122904 22045365 ~ 22056229 (+)
AMCG00016494 NA coding downstream 224212 22146673 ~ 22157270 (+)
AMCG00016496 NA coding downstream 404338 22326799 ~ 22327023 (+)
G13799 NA non-coding upstream 1266538 20653670 ~ 20655615 (+)
G13798 NA non-coding upstream 1269881 20646835 ~ 20652272 (+)
G13791 NA non-coding upstream 1304456 20614745 ~ 20617697 (+)
G13700 prdx4,LOC107734341,LOC107665442,LOC107654298,LOC105904605 non-coding upstream 1496311 20424137 ~ 20425842 (+)
G13685 NA non-coding upstream 1518647 20393511 ~ 20403506 (+)
G13892 NA non-coding downstream 313710 22236171 ~ 22236399 (+)
G13894 NA non-coding downstream 407602 22330063 ~ 22330299 (+)
G13902 NA non-coding downstream 555875 22478336 ~ 22478597 (+)
G13928 NA non-coding downstream 992335 22914796 ~ 22915056 (+)
G13938 NA non-coding downstream 1087656 23010117 ~ 23010500 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other upstream 90005 21782106 ~ 21832148 (+)
AMCG00016429 lamtor1,LOC106581407 other upstream 2042428 19875056 ~ 19879725 (+)
AMCG00016407 NA other upstream 3448464 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 4322572 17562418 ~ 17599581 (+)
G13012 NA other upstream 4800221 17116793 ~ 17121932 (+)
AMCG00016502 NA other downstream 1943806 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 2015590 23938051 ~ 23945024 (+)
G14057 NA other downstream 2157556 24080017 ~ 24110182 (+)
AMCG00016537 NA other downstream 2557245 24479706 ~ 24561807 (+)
G14326 NA other downstream 3085501 25007962 ~ 25010687 (+)

Expression


Co-expression Network