G13938


Basic Information

Item Value
gene id G13938
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 23010117 ~ 23010500 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU17262
GGAAAAGTATTAACTCTACGACAATTACCTCCATTTGTAGGTCAAATGAGAACCTCATGGCATGTTGTGGATGTTACTGAATGTTGTATTACCTATTGCTCTACTATGTTGTGTACATGTTACGTTACTGGAGATTCATTACAGTTTAGGGTTAATGATATAACCAAGTTATCAACCTTACATGCTGTACCTGTGGATAAAATAGGATATTTGCAAGCACGACTAGTAGGCAATCACACGTGGTGCATTACAACAAACCGttattatttgtacaataaTTTCGAATGTCGAATAACTAACTCCACTTTCTGTGTTCAAACCAGAAGTGCAATTAAGATTGGTGATCTGACCTTGCCTTTTATTCCGCAAGACTTAAATTTTGCA

Function

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU17262 True 384 lncRNA 0.36 1 23010117 23010500

Neighbor

gene id symbol gene type direction distance location
AMCG00016499 NA coding upstream 25460 22978894 ~ 22984657 (+)
AMCG00016498 NA coding upstream 342795 22656660 ~ 22667322 (+)
AMCG00016496 NA coding upstream 683094 22326799 ~ 22327023 (+)
AMCG00016494 NA coding upstream 852847 22146673 ~ 22157270 (+)
AMCG00016491 NA coding upstream 953888 22045365 ~ 22056229 (+)
AMCG00016501 NA coding downstream 642894 23653394 ~ 23716846 (+)
AMCG00016500 NA coding downstream 718348 23728848 ~ 23751132 (+)
AMCG00016503 NA coding downstream 757636 23768136 ~ 23815510 (+)
AMCG00016509 NA coding downstream 893504 23904004 ~ 23913433 (+)
AMCG00016507 ccdc58,LOC107733097 coding downstream 915291 23925791 ~ 23934450 (+)
G13928 NA non-coding upstream 95061 22914796 ~ 22915056 (+)
G13902 NA non-coding upstream 531520 22478336 ~ 22478597 (+)
G13894 NA non-coding upstream 679818 22330063 ~ 22330299 (+)
G13892 NA non-coding upstream 773718 22236171 ~ 22236399 (+)
G13873 NA non-coding upstream 1087656 21922153 ~ 21922461 (+)
G13939 NA non-coding downstream 146 23010646 ~ 23010869 (+)
G13943 NA non-coding downstream 101426 23111926 ~ 23112165 (+)
G13949 NA non-coding downstream 315060 23325560 ~ 23325760 (+)
G13953 NA non-coding downstream 336927 23347427 ~ 23347712 (+)
G13979 lipt2 non-coding downstream 851715 23862215 ~ 23865800 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other upstream 1177969 21782106 ~ 21832148 (+)
AMCG00016429 lamtor1,LOC106581407 other upstream 3130392 19875056 ~ 19879725 (+)
AMCG00016407 NA other upstream 4536428 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 5410536 17562418 ~ 17599581 (+)
G13012 NA other upstream 5888185 17116793 ~ 17121932 (+)
AMCG00016502 NA other downstream 855767 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 927551 23938051 ~ 23945024 (+)
G14057 NA other downstream 1069517 24080017 ~ 24110182 (+)
AMCG00016537 NA other downstream 1469206 24479706 ~ 24561807 (+)
G14326 NA other downstream 1997462 25007962 ~ 25010687 (+)

Expression


Co-expression Network