G13979 (lipt2)


Basic Information

Item Value
gene id G13979
gene name lipt2
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 23862215 ~ 23865800 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU17308
CCTCTTCCAGTGCACTAATACTGGGCACATTCACACAGCTCGAACCCCGACCCTTTTATTACAATTACCTATTGCACAGATCTTGTTCTCTGCCACCCAGACTCCCGTGTCCGGCGACGTGGAGGCCTTGATCCCAAACCTGCCACACAGCTTGATGACCGTCCTCTCCAGCTCGCACACGTACCAGCGGACGCTCTTCTTGAAGCAGCCCAGGTGGAGGACGGGGTAGCACACCAGCTGCCCGGGCCCGTGGAAGGTCACCAGTCCGCCGCGGTTGGTCCGGAAGAACTCGGCGCCGAGCCGCCTGAGCCTCCGCTCCTCCTCGGCGGGGTAGGTAGCCTGCCGGAGGCCGACAGTGTAGACGGGAGGGTGCTCACACAGCAGCAGGGTGTTCGGGGCCTGTCCCAGGGGCCGGGAGAGGGAGTCCAGCTGCTGACGGACATACTGCTGCTGTACCTGCAAGGAGTTTGCATAGGAGATCCGTCCCAAATTCACCACCTGCACGGATGCCCTGGCCGGGGTCATTATTGTTAGTTTTAGTAATTTAGTAGTTTATAGTTTTGAAAGAGTATACCTTTGTCTTTTGTGAAGgtggttttatatttttcacatattcTAGAATACTAGTTTCAACAATCTGAACATTGCTGGTTCGAGTGTCGAGgcttacaatatatattatgtagCAGTACACTTCAGGGGCTCCCTGCCCGTTTCAGCAGCGGGGGGGAAATATACAGACTGCAGTCCGTCTCGGAGAAGCGAGTGTGCACATGTGTCCGTCCCTGGTTATGAGAGCTGCGCTTCGGCCTGCCATCGTAGAAGCTGCCCACCGTGGTAATCCTGTGGTACAGGATAATAAGCAGAAAGGACGCGGCCCCAACACTGTTCACAAACCGCATCAGTTCTGCATCTTCCGACATCATCCAGACCTGGAAAACAAAGGGCTGTGTTACACCTGGGTGACGGCTGCGTTTTAGATCATGGGAACTAATATAATGTATCGGAGATCTCATTTGTGTCCAGCGACCCGTTAATGTACACACGAACCACCTTGTGTCAATTCAAAACACAGGGTTACTGCCGTGTGTTTATACTCCAGCttgatgtgtatttaaaacGCAGTAGATTAGGGTATTCATCTTTTCAATATGTTGAATGAAACGAACACTATACTTTAAAAAGGGACATTCAATCTCACCAGTTTGTTTCGATTCCCCCTACTTTAAGGGCGCAGCCATATTTACAAACTCAACTTTATTGACAACACGACGCACACGTTCAAATAACGTGTGGTCTGCATTGCAGCCTCAATGCACCctttttatgcattattttatttttgtatgttataTGCGATCGCCTGCTGCTCTAAAACCATTCACAGATTCATATCAAGTAAGCGAAAATTAACATTGAATAGTTTAGTTATACAAGTTTGCTGTCTGTGCAAAACGATTTTGTAATGCAGACAATTGGTCTGTGTCCCCTGGAGATTGGAAACGTTCAGGCGATGTACATacgtttgtttaaaaaaaaaaagaaaagaaaaaaaagcatattcaCATCCACATTATCAACAGATTTCCACCaacatggaaaaagaaaaaaaacacgagTTTGTCATTAAGGGAAATGTATTCTCTAAACACTGGCTATTCTGTTCAGTAAGAGCCAGTGTCCCATGATATTAAAAACTACTGCCATGAATGTGCCCAGGACTGAGGCCGTCACTGTCTGCAAGAAGAGTAATTTAATTAGTCAAAGTGATGCATTCGTCTCTAAATGAcgggacatttttgttttacattgcttAACCTTTATaactaaattactttaaataagtTTACTCCTGTGGggaaaaaacttttaaaagaaGGTACAGCTTTGAAAGAAATCAGTCTCTACAGTTGTCAACGAAGCAGATCGTCCAGTTCAGACCAACATGAACCGCCAGCGCGTCGTGCTGTTTCTCCTGCTGGCTTTCATAGCCTTAACATGCCAGGTCCAGGGAGCGGTCGGGTTCCCCTGGGGCTGTTCCAACTACAGCGGTACCTGCCGCCCCACCTGCCTGCCCCAGGAGCTTCCCTTCGGGCCCTTCGGCTGTGCTAAAGGATTTGTatgCTGTGTGTCTCATATCCTATGAAGACCGAGAGCCTTGTGATTTCAATGTGCTTTTTATTACTGTCAACTTCAGTCTCTCATGTGACTCTAAGTTTTAAACATGGCACTTGCTGTCTCTTCTGCTGTTCTTAACCCACTTTTagcccctctctgtccctcacattattatttttttgcagtacAGTCCTTTGGCATTTTAAGTTAATAGTCTCtacaaatcctttttttaaGGCATCAGAGATCACAACCAGCTTCTGCTAGCCATGTCAACACAACCCGAAGCAGCAGGATTTTAATTTGGCATTTAACTGAGTTCTATCTACCATCGGGCTCCTAGCTTACCTGGATAGTCAGCCTCTTTCTGTTTCATGCAGAGAAGCATTCTTAAAGAACCATTTCAGTATAGGGCTCTCAATTGGAAACCTTGCAATAAGTCTGCACACAAGATAAAATCTCTTCTATGGGCCATAGCACATTTATCTTGAaatttaaggttttattttttgttttacagtgcaTAATCTTACTTGTTTTCACTTATTAATTCTCAGacaaaatcagaaaaaagtattttttgttctAAAACTCTATGCTTTTATGGATGAAAACTCATCCACATCGTTGTTTTAGTGTGTGACAACACCTACATTTTCTtgatatattgttattttgaataatgtatgcTATAGTATTATTCTgtattgcattaaaatatatattccaataca
>TU17309
CCTCTTCCAGTGCACTAATACTGGGCACATTCACACAGCTCGAACCCCGACCCTTTTATTACAATTACCTATTGCACAGATCTTGTTCTCTGCCACCCAGACTCCCGTGTCCGGCGACGTGGAGGCCTTGATCCCAAACCTGCCACACAGCTTGATGACCGTCCTCTCCAGCTCGCACACGTACCAGCGGACGCTCTTCTTGAAGCAGCCCAGGTGGAGGACGGGGTAGCACACCAGCTGCCCGGGCCCGTGGAAGGTCACCAGTCCGCCGCGGTTGGTCCGGAAGAACTCGGCGCCGAGCCGCCTGAGCCTCCGCTCCTCCTCGGCGGGGCCAGGTCCAGGGAGCGGTCGGGTTCCCCTGGGGCTGTTCCAACTACAGCGGTACCTGCCGCCCCACCTGCCTGCCCCAGGAGCTTCCCTTCGGGCCCTTCGGCTGTGCTAAAGGATTTGTatgCTGTGTGTCTCATATCCTATGAAGACCGAGAGCCTTGTGATTTCAATGTGCTTTTTATTACTGTCAACTTCAGTCTCTCATGTGACTCTAAGTTTTAAACATGGCACTTGCTGTCTCTTCTGCTGTTCTTAACCCACTTTTagcccctctctgtccctcacattattatttttttgcagtacAGTCCTTTGGCATTTTAAGTTAATAGTCTCtacaaatcctttttttaaGGCATCAGAGATCACAACCAGCTTCTGCTAGCCATGTCAACACAACCCGAAGCAGCAGGATTTTAATTTGGCATTTAACTGAGTTCTATCTACCATCGGGCTCCTAGCTTACCTGGATAGTCAGCCTCTTTCTGTTTCATGCAGAGAAGCATTCTTAAAGAACCATTTCAGTATAGGGCTCTCAATTGGAAACCTTGCAATAAGTCTGCACACAAGATAAAATCTCTTCTATGGGCCATAGCACATTTATCTTGAaatttaaggttttattttttgttttacagtgcaTAATCTTACTTGTTTTCACTTATTAATTCTCAGacaaaatcagaaaaaagtattttttgttctAAAACTCTATGCTTTTATGGATGAAAACTCATCCACATCGTTGTTTTAGTGTGTGACAACACCTACATTTTCTtgatatattgttattttgaataatgtatgcTATAGTATTATTCTgtattgcattaaaatatatattccaataca

Function

symbol description
lipt2 Predicted to enable ligase activity; lipoyl(octanoyl) transferase activity; and octanoyl transferase activity (acting on glycine-cleavage complex H protein). Predicted to be involved in positive regulation of oxygen metabolic process and protein lipoylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in mitochondrion. Orthologous to human LIPT2 (lipoyl(octanoyl) transferase 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17308 True 2852 lncRNA 0.43 3 23862215 23865800
TU17309 False 1182 lncRNA 0.50 3 23862215 23865800

Neighbor

gene id symbol gene type direction distance location
AMCG00016503 NA coding upstream 46705 23768136 ~ 23815510 (+)
AMCG00016500 NA coding upstream 111083 23728848 ~ 23751132 (+)
AMCG00016501 NA coding upstream 145369 23653394 ~ 23716846 (+)
AMCG00016499 NA coding upstream 877558 22978894 ~ 22984657 (+)
AMCG00016498 NA coding upstream 1194893 22656660 ~ 22667322 (+)
AMCG00016509 NA coding downstream 38204 23904004 ~ 23913433 (+)
AMCG00016507 ccdc58,LOC107733097 coding downstream 59991 23925791 ~ 23934450 (+)
AMCG00016508 NA coding downstream 93504 23959304 ~ 23972841 (+)
AMCG00016516 NA coding downstream 156614 24022414 ~ 24029956 (+)
AMCG00016515 NA coding downstream 207922 24073722 ~ 24077286 (+)
G13953 NA non-coding upstream 514503 23347427 ~ 23347712 (+)
G13949 NA non-coding upstream 536455 23325560 ~ 23325760 (+)
G13943 NA non-coding upstream 750050 23111926 ~ 23112165 (+)
G13939 NA non-coding upstream 851346 23010646 ~ 23010869 (+)
G13938 NA non-coding upstream 851715 23010117 ~ 23010500 (+)
G14132 NA non-coding downstream 452000 24317800 ~ 24321319 (+)
G14136 NA non-coding downstream 471170 24336970 ~ 24338848 (+)
G14127 eif1ax,EIF1AX,eif1axb,LOC105905255,LOC106563585,LOC106590461,LOC108411992 non-coding downstream 504526 24370326 ~ 24375827 (+)
G14177 NA non-coding downstream 553558 24419358 ~ 24419607 (+)
G14354 NA non-coding downstream 1256283 25122083 ~ 25122392 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other upstream 2030067 21782106 ~ 21832148 (+)
AMCG00016429 lamtor1,LOC106581407 other upstream 3982490 19875056 ~ 19879725 (+)
AMCG00016407 NA other upstream 5388526 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 6262634 17562418 ~ 17599581 (+)
G13012 NA other upstream 6740283 17116793 ~ 17121932 (+)
AMCG00016502 NA other downstream 467 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 72251 23938051 ~ 23945024 (+)
G14057 NA other downstream 214217 24080017 ~ 24110182 (+)
AMCG00016537 NA other downstream 613906 24479706 ~ 24561807 (+)
G14326 NA other downstream 1142162 25007962 ~ 25010687 (+)

Expression


Co-expression Network