G14487 (rpl19,LOC101068736,LOC103368168)


Basic Information

Item Value
gene id G14487
gene name rpl19,LOC101068736,LOC103368168
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25516989 ~ 25520096 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU17979
GGTTGTGTCTTTCTGTACACTTTATTAACGAAGAGAAAGTGGGGACAAGGCTCATTTCTTGGTCTCCTCTTCCTTGGACAGAGTCTTGATGATCTCCTCCTTCTTGGCCTGGAGACGCTCCTCGCGACGCTTGCGAGCTTCCTTGGTCTTGGAGCGGCGAGCCTCTGCCTGGTCACCAGGAGCTTCTTGCGAGCCTTGTCTGCCTTCAGCTTGTGAATGtgctccatcaggatgcgcttGTTCTTGAAGACGTTTCCCTTAACCTTCAGATACAGACTGTGGTAATGTGGCGATCGATCTTCTTGGACTCCCGGTAACGGCGCAGCAGACGGCGCAGAATTCGCATGCGGCGCATCCACGACAGCTTCTCTGGCATACGGGCGTTGGCAGTACCCTTCCTCTTACAATGCCCATGTGGCGGCCCTTACGGCGCGCCAGCATGTTCTTGCGACAGCGGGCACGTGAATGCACAGTCACTGGCTTCCTGATGATCAGACCATCCTTCACCAGCTTCCTGATCTGCTGTCGGAGTTGGCATTGGCGATCTCATTGGTCTCGTTGGGGTCGAGCCACACCTTCTTCTTGCCACAGCGGAGGACGCTGGACGCCAGCCGCTTCTGAAGCCTGAGCATGCTGGAAATGAGGGATGGACAGagttgttaatgtttttaaagtcaaatgCCAACCATTATATGCCATTCGAGCACAAGAC
>TU17984
GGTTGTGTCTTTCTGTACACTTTATTAACGAAGAGAAAGTGGGGACAAGGCTCATTTCTTGGTCTCCTCTTCCTTGGACAGAGTCTTGATGATCTCCTCCTTCTTGGCCTGGAGACGCTCCTCGCGACGCTTGCGAGCTTCCTTGGTCTTGGAGCGGCGAGCCTCTGCCTGGTCGCCAGGAGCTTCTTGCGAGCCTTGTCTGCCTTCAGCTTGTGAATGtgctccatcaggatgcgcttGTTCTTGAAGACGTTTCCCTTAACCTTCAGATACAGACTGTGGTACTGTGGCGATCGATCTTCTTGGACTCCCGGTAACGGCGCAGCAGACGGCGCAGAATTCGCATGCGGCGCATCCACGACAGCTTCTCTGGCATACGGGCGTTGGCAGTACCCTTCCTCTTACcATGCCCATGTGGCGGCCCTTACGGCGCGCCAGCATGTTCTTGCGACAGCGGGCACGTGAATGCACAGTCACTGGCTTCCTGATGATCAGACCATCCTTCACCAGCTTCCTGATCTGCCTGGAGTTGGCATTGGCGATCTCATTGGTCTCGTTGGGGTCGAGCCACACCTTCTTCTTGCCACAGCGGAGGACGCTGGACGCCAGCCGCTTCTGAAGCCTGAGCATGCTGGAAATGAGGGATGGACAGagttgttaatgtttttaaagtcaaatgCCAACCATTATATGCCATTCGAGCACAAGAC

Function

symbol description
rpl19 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within hemopoiesis. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL19 (ribosomal protein L19).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17979 True 712 lncRNA 0.54 5 25516989 25520096
TU17984 False 710 lncRNA 0.42 5 25516989 25520096

Neighbor

gene id symbol gene type direction distance location
AMCG00016594 cacnb1,LOC106600985,LOC103392742 coding downstream 33279 25449909 ~ 25483710 (-)
AMCG00016596 NA coding downstream 67237 25439336 ~ 25449752 (-)
AMCG00016595 LOC106600984,LOC106607252,LOC107754318,LOC105013306,LOC107670909,LOC107745936,LOC107567387 coding downstream 78214 25433834 ~ 25438775 (-)
AMCG00016590 NA coding downstream 93330 25421283 ~ 25423659 (-)
AMCG00016592 abhd10,LOC106590440 coding downstream 149410 25363398 ~ 25367579 (-)
AMCG00016597 NA coding upstream 91467 25611563 ~ 25642333 (-)
AMCG00016600 fbxl20,LOC107727724,LOC107666314,LOC107665129,LOC107549884,LOC107563017 coding upstream 156473 25676569 ~ 25703327 (-)
AMCG00016599 med1 coding upstream 185985 25706081 ~ 25726547 (-)
AMCG00016601 neurod2,LOC102791336,LOC102193051,LOC101464503 coding upstream 304650 25824746 ~ 25825846 (-)
AMCG00016614 NA coding upstream 584820 26104916 ~ 26117450 (-)
G14472 NA non-coding downstream 111888 25404895 ~ 25405101 (-)
G14400 NA non-coding downstream 394614 25122090 ~ 25122375 (-)
G14311 NA non-coding downstream 610443 24905121 ~ 24906546 (-)
G14245 NA non-coding downstream 736723 24716726 ~ 24780266 (-)
G14222 NA non-coding downstream 832454 24683065 ~ 24684535 (-)
G14496 NA non-coding upstream 22950 25543046 ~ 25545725 (-)
G14507 NA non-coding upstream 84684 25604780 ~ 25609059 (-)
G14517 NA non-coding upstream 152208 25672304 ~ 25675200 (-)
G14578 NA non-coding upstream 397934 25918030 ~ 25921548 (-)
G14585 NA non-coding upstream 451690 25971786 ~ 26022263 (-)
AMCG00016591 NA other downstream 96618 25413316 ~ 25420371 (-)
AMCG00016579 NA other downstream 239511 25264772 ~ 25277478 (-)
G14392 NA other downstream 433290 25080568 ~ 25083699 (-)
AMCG00016562 rnf6 other downstream 501646 25007974 ~ 25015343 (-)
G14305 NA other downstream 634891 24881148 ~ 24882098 (-)
G14534 NA other upstream 232899 25752995 ~ 25754472 (-)
G14637 NA other upstream 561407 26081503 ~ 26083167 (-)
AMCG00016617 NA other upstream 627414 26147510 ~ 26149543 (-)
AMCG00016616 sp6,LOC102212756,LOC101463567,LOC100707362,LOC107396441,LOC106564946,LOC103384358 other upstream 636425 26156521 ~ 26159922 (-)
G14676 NA other upstream 661648 26181744 ~ 26184778 (-)

Expression


Co-expression Network