G14791


Basic Information

Item Value
gene id G14791
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26589606 ~ 26657318 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU18375
CTGGTCCCGCTCTCCCACTCTGTCTTGGTGTCCTTATCCCGGTCCTGGCTCTGATGCTCCCCACTGTGGTGCTTCTGGACGATGCGCATCCCTCCCGCCTTCACTGCAGCCGGCCAAGGaggacagagggggagagacgAACACAAAGCACAGCCAGAAGAGCATTAGGAGGGACATCAGGCCCAGACCCATCACTGCAGCAGGTATGTGTGGGCTCAGGGCTGGCATGCTGCTTTCTCTCCACTGCCTGaccacaaatgtttattttatattattatttgatgtatCTGAACATTGATTTACTTGCTACCCTGTATGCTTCACTGGCTGTTCTGTAAGCTGGCAGTTTTCCAGCCCTGTTATGGCTGCACTACCCCCGGATAAAGATATAAAAACAGTGATGAATCCACACGTGGCATCACTGGATCTAGGCACACATTTGGCAATCTTAAAAAGTATACCATTACTATGAGCTTGAGCAGATAAGAAACTATTTTGTGTAGTTGGCAAGGGGAGGCACCCATAACACCTACCCCTCCCATGCCTTCAGATTTTCCCTGCTGTGGTTCTTCCCCTGCAGAGTTTTCACCGCTAGCAAGAAACATTTTGAGTTGAAGACCAGACCACAAACCATTCTTGGAGTGATGGCAGGTCAGGACTGTCATTTTAAGATTTCCAATTCACAGTGTTAAACCACTGCAGTCTCCAATTCATTGtaatcaagttaaaaaaaaaatacaaatcaaaaccaataactacaacaacaaccatCAAAACTATCATCTCTGGTTCAGacaaaaaacaactacatttaGATTTGTCATTAAATCATGATACATCCAAATCTTCAATTCGTACAGGTATAACTTTATTAACctataataaatacaccaaaTCTTTACTCTGAATGCTCATACTGCAGTGCCAAACTATGAGACAGGACACTATACTCCACTGTGCTATATCAACAGACCATCTACCCCATTTTAAGCCCTGTCAGTGTTGCGATTTGTTTGggtccattaaaataatattagtgatagtcttaataataataaataataaaaacatgataataCTTAAATCAAGGGAAAGTGAACAAAAAAGCTTGTCCTGTCCGATAGGCTCATTTCAAGAGCCTACGCTTCTCACAGGGCCTGGTTACTGCTAAACCTCCCCAGTTGCACCAGTTGCGGGCAAGAAACGTCTCCGTGCCACTGCCTGCCCGAGAGCAGCCTGGGGGGACAGCTCGACAGTCAGACTGAAACCTGTCTCTGTGAAACAGGTGAGCCTGAGGAGATAACAGGTGCGGAAGAGGATCAGAAACGGATGCATGTCCTAAAGCACGGAAACTGCTGCAAATCAGACCTGACTGATAaggtgatttttatttatacataaaaaaaaatggctttTGTGTAAATTGTCAGTCACCCTCGATAAGGGCATGTGccaagacataaataataaaagcatgttACACTTTCTTATTACTTCATACCACTTGTGTATCAAATGGATATTGTAGTTGCTGTTATTCTCCTTGTtattatatgaatacaaatataatataattaacaaaGTACAGGGACAAAACGGGATTTTACAACCGCACTGAAAAGCAACGGAGGACACACCTCGATAAAGACGAAGTGCACAGATTGTAACGATTTGGGCGTGGGTTCAGAGCAGATCTGCGCATGTGCTGCAGGTTGCTGGCGTCACAAAGCAACACTGTGCAGGCCCGCACTGCTGCCAGGAGACAACAGATGAAAGGGTGTCCGGCCCTCTTTGAATTCCCTGCACACGATTGTGTCAGCCTGCTTTCACAGCAGTCCCTTAACCACACAGTGCGTCACATAACCCAGCGCTACACAGCAGCCTATATAGAACAGACCTATTCCAGAACCGGGCTGCTGCATTCAGAAACGGGTCCTATTGCAGCTTTCATCGCTCTTGTCGTGTATCAGTCATAACAGCAGAGGATTAAATATTACACCTCACAGTGTAAAATGAACAGACACGTCATCCAACATcgattttgtcatttaaaacttTCACAGTCGCTTTCTCAGACTTCTCGCTTCGACGTCCCCCGCCCCCCTTCAGATAaaaccaacccccccccctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgacacaagCCCCCTCTCACACTCAGACCGCACTTCCTCGCTCAATGCGCTGACAACTCAGAGACCTGCGGGAGCGTGGCCGCCCTTGCTGGGCAGTCTGTCGTGCGGCGGGGATGACATTCCACCAGCTCCTTCACCTGACAAATATatactgcaaagaaaataatgggTAAAATGATACTAAAAACCAAAATAACTCTACATTAACAGTATTAACGAAATAAAAACCACTAGTGTTAGCACAGCGCTTCTGTTTATGAAGATAACAGCAAACTGCTTCCGTATCCACTGGGCTCTCAGAATCAAAACAAAGCCATGTGACCCGGCTGGGCGGAGTCTGCGGGTCACCCGGGTCCTCGTCTTCTTCGTCGTGTTTGGGAACAACGTGCGGCGCTCCTTGCCCTGTACACGCACACTAGTGAGGATTCAGTCATATTCCCAGAGAGACCCAGCCACACCATGGCACCCCCAAGAAAAACCGCACCATCCCTCAGACACACCGCACGTCCATGGAATGGACTGTTCCACGCCTGCCACGTGACCCGCAGTCCAGACGCGTGGCCCGCGCGGGAGCAGCGCGAGACAggtgcgtgtgtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgattttgaagacttgaatcaagtccccacgtactGTAGTCTCCTGTTCCAGCGTGAACAGAGCAGTTGAGTGTGGGGCTAGATGGTTAAATCAGTTTTACAAGCAGTGTACTGCATcaatttgattgattttctttctaaatgcaG
>TU18377
CTGGTCCCGCTCTCCCACTCTGTCTTGGTGTCCTTATCCCGGTCCTGGCTCTGATGCTCCCCACTGTGGTGCTTCTGGACGATGCGCATCCCTCCCGCCTTCACTGCAGCCGGCCAAGGaggacagagggggagagacgAACACAAAGCACAGCCAGAAGAGCATTAGGAGGGACATCAGGCCCAGACCCATCACTGCAGCAGGTATGTGTGGGCTCAGGGCTGGCATGCTGCTTTCTCTCCACTGCCTGaccacaaatgtttattttatattattatttgatgtatCTGAACATTGATTTACTTGCTACCCTGTATGCTTCACTGGCTGTTCTGTAAGCTGGCAGTTTTCCAGCCCTGTTATGGCTGCACTACCCCCGGATAAAGATATAAAAACAGTGATGAATCCACACGTGGCATCACTGGATCTAGGCACACATTTGGCAATCTTAAAAAGTATACCATTACTATGAGCTTGAGCAGATAAGAAACTATTTTGTGTAGTTGGCAAGGGGAGGCACCCATAACACCTACCCCTCCCATGCCTTCAGATTTTCCCTGCTGTGGTTCTTCCCCTGCAGAGTTTTCACCGCTAGCAAGAAACATTTTGAGTTGAAGACCAGACCACAAACCATTCTTGGAGTGATGGCAGGTCAGGACTGTCATTTTAAGATTTCCAATTCACAGTGTTAAACCACTGCAGTCTCCAATTCATTGtaatcaagttaaaaaaaaaatacaaatcaaaaccaataactacaacaacaaccatCAAAACTATCATCTCTGGTTCAGacaaaaaacaactacatttaGATTTGTCATTAAATCATGATACATCCAAATCTTCAATTCGTACAGGTATAACTTTATTAACctataataaatacaccaaaTCTTTACTCTGAATGCTCATACTGCAGTGCCAAACTATGAGACAGGACACTATACTCCACTGTGCTATATCAACAGACCATCTACCCCATTTTAAGCCCTGTCAGTGTTGCGATTTGTTTGggtccattaaaataatattagtgatagtcttaataataataaataataaaaacatgataataCTTAAATCAAGGGAAAGTGAACAAAAAAGCTTGTCCTGTCCGATAGGCTCATTTCAAGAGCCTACGCTTCTCACAGGGCCTGGTTACTGCTAAACCTCCCCAGTTGCACCAGTTGCGGGCAAGAAACGTCTCCGTGCCACTGCCTGCCCGAGAGCAGCCTGGGGGGACAGCTCGACAGTCAGACTGAAACCTGTCTCTGTGAAACAGGTGAGCCTGAGGAGATAACAGGTGCGGAAGAGGATCAGAAACGGATGCATGTCCTAAAGCACGGAAACTGCTGCAAATCAGACCTGACTGATAaggtgatttttatttatacataaaaaaaaatggctttTGTGTAAATTGTCAGTCACCCTCGATAAGGGCATGTGccaagacataaataataaaagcatgttACACTTTCTTATTACTTCATACCACTTGTGTATCAAATGGATATTGTAGTTGCTGTTATTCTCCTTGTtattatatgaatacaaatataatataattaacaaaGTACAGGGACAAAACGGGATTTTACAACCGCACTGAAAAGCAACGGAGGACACACCTCGATAAAGACGAAGTGCACAGATTGTAACGATTTGGGCGTGGGTTCAGAGCAGATCTGCGCATGTGCTGCAGGTTGCTGGCGTCACAAAGCAACACTGTGCAGGCCCGCACTGCTGCCAGGAGACAACAGATGAAAGGGTGTCCGGCCCTCTTTGAATTCCCTGCACACGATTGTGTCAGCCTGCTTTCACAGCAGTCCCTTAACCACACAGTGCGTCACATAACCCAGCGCTACACAGCAGCCTATATAGAACAGACCTATTCCAGAACCGGGCTGCTGCATTCAGAAACGGGTCCTATTGCAGCTTTCATCGCTCTTGTCGTGTATCAGTCATAACAGCAGAGGATTAAATATTACACCTCACAGTGTAAAATGAACAGACACGTCATCCAACATcgattttgtcatttaaaacttTCACAGTCGCTTTCTCAGACTTCTCGCTTCGACGTCCCCCGCCCCCCTTCAGATAaaaccaacccccccccctctctctctctctctctctctctctctctctctctctctctctctctctcacacacacacacacacactctcactctctttctctctctctctctcacacacacacaagctgcaAAGGGAAAATACTGTAGAATGGCTCCACAGAAGTAGCTCCTTGGACTTTATACAGGCCTGTGGTCACGCCTCCTCATCCTGCAGCTCCGGGGAGTGGAGAGTGAGGACAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18375 True 2981 lncRNA 0.50 2 26589606 26596857
TU18377 False 2354 lncRNA 0.45 2 26589606 26657318

Neighbor

gene id symbol gene type direction distance location
AMCG00016646 NA coding upstream 5940 26583454 ~ 26583666 (+)
AMCG00016637 NA coding upstream 17249 26559807 ~ 26572357 (+)
AMCG00016639 NA coding upstream 67999 26517843 ~ 26521607 (+)
AMCG00016641 NA coding upstream 75319 26509041 ~ 26514287 (+)
AMCG00016632 NA coding upstream 121604 26462323 ~ 26468002 (+)
AMCG00016636 NA coding downstream 8127 26665445 ~ 26667680 (+)
AMCG00016647 NA coding downstream 26324 26683642 ~ 26700201 (+)
AMCG00016650 NA coding downstream 200400 26857718 ~ 26869181 (+)
AMCG00016654 NA coding downstream 235961 26893279 ~ 26897534 (+)
AMCG00016655 NA coding downstream 254650 26911968 ~ 26918768 (+)
G14781 NA non-coding upstream 143844 26442152 ~ 26445762 (+)
G14768 NA non-coding upstream 191679 26397649 ~ 26397927 (+)
G14755 NA non-coding upstream 207186 26380051 ~ 26382420 (+)
G14703 NA non-coding upstream 285264 26234326 ~ 26304342 (+)
G14704 NA non-coding upstream 348362 26239170 ~ 26241244 (+)
G14800 NA non-coding downstream 47679 26704997 ~ 26705204 (+)
G14802 NA non-coding downstream 54913 26712231 ~ 26713129 (+)
G14803 NA non-coding downstream 58251 26715569 ~ 26715801 (+)
G14992 NA non-coding downstream 605572 27262890 ~ 27274297 (+)
G15005 hoxb7a,hxb7a,hoxb7,hoxb7ab non-coding downstream 624106 27281424 ~ 27282569 (+)
AMCG00016638 krt222 other upstream 41394 26527319 ~ 26548212 (+)
AMCG00016640 NA other upstream 90364 26489938 ~ 26499242 (+)
AMCG00016633 NA other upstream 155950 26427339 ~ 26433656 (+)
AMCG00016625 mllt10,LOC106942732 other upstream 287092 26285802 ~ 26302514 (+)
AMCG00016607 NA other upstream 639430 25940528 ~ 25950176 (+)
AMCG00016663 NA other downstream 308979 26966297 ~ 26993948 (+)
AMCG00016683 NA other downstream 885168 27542486 ~ 27553120 (+)
AMCG00016691 NA other downstream 931161 27588479 ~ 27604879 (+)
AMCG00016690 NA other downstream 955787 27613105 ~ 27626090 (+)
AMCG00016699 LOC106607176 other downstream 1120109 27777427 ~ 27799126 (+)

Expression


Co-expression Network