G14818


Basic Information

Item Value
gene id G14818
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26430455 ~ 26468099 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU18414
ttcttaaataaaaaacacagacaaggtgttttattttccaccaAACAAAGGTTTATTCTCCTGAGACAGACGCCTTATAGGACAGAACAGGAAATAGAAAAAgggtttgtttcagattttatcactctctctctcttttacttCACAAACAGCAGCTCATTTGAAAACACACTGAAGGGGATCGGCTGACTCATGTTGCTTTGGCATTGATGATTCTGAGGTATGTTTTGGAGAGACATGCTCAGCATTCGAATCAGAGCAGGTGGCATCACTCAAACCCCCAAGTGTGCAGGACTCTAACCCGAGCCTCGACTCCAATCTTTGACATTGCGCTATGCAAAGACCATGCATGTATCATTTAACCTTTTCTCAAGGGACTAAGTGgtgtcttttcttgttttgttttgttcttaacaGAGACGAGAGACATAGAGGTTACAGAGCACAGAGAAGTACTGCCGAGCTTAAGCTGTGAAGGAGGTATGGAGATGCAGCAGTCTGACTGAGGCAGATCTGTGGGCGGGGGGGAagcgaggaggaggaaggtGTCTGTCTGAGAGACTGTGGACCCCTGGCTTCTGTCTCTATTTGCTGGAGtggatggtggtggtggtgactGTGGTGGACCAATTCGTCCTGCAGCCCCTCGATCTCCATCTCCAGGGTAGACTTGTTCAGGGTGGTCTGGTCCAGCATGGTGCGGAGGCTGGCGATGTCCGCCTCCACAGACTGCCTCATCATCAGCTCATGCTCGAACCTGTGCAAGGGAGTTGGGGGGGGAGAAGGGAGGGGGGAATTAGAATGAGTCACAGGGTGTGGTGCCAGGCgaggcacagaggagaggggGTGTTGGGGGGTTGGGTCAAGCAGCACAGATGAGGCGagccaatacaaataaaaattgaaatgccAATTGGTCATTTTGATTTgtgaaaaattattatttaacaggCAAACAAGCTCTGGGGTTAGGAGGATGGATCGTGAGCAGGAAAGACCGGCTGCTTAACTTTGCCTATTGGGCTAAGCTGAAGATACAAGTCACCTTGTGTGTCTCACCAGAACACTTTGGAAAACTGTAACTTCTTGAAGttgaattgttatgtttatTGTGTGGGCAGCAAGGGAAGAGCTTCATCTGCAAAATGCAGGGATACGTGTCACTTAACACTcacctgcacacacatacacacacactcacatgcactCACACTTACACAGGGGGGGATTTCTTAAAAGCTGCTGAGGCATTTCAGATAGCAGCCCGCCAGCACGGTTGTCTAGCACTCAGGGGGATGGGTCACTCACTTGGTGCGGAAGTCTTCGGCAGCCAGTTTGGAGTTGTCGATCTGCAGGATGACCTTGGCATTGTCAATGGTGGCAGCTCCGATCTGGAAAGCAGAGTGGAGAGAATTG
>TU18415
NNGCTGACCACCTTCCCATCCACGACCTCCTCCACTATGGTCACCACCTTGCGAGTTGTGGTGGAATCTGTGCTCTTTGATGAGTCTGTGCTTCTGCTGCCTTGACTGCTTTGGCTGCTTTGTTGAACTGCTGACCTGCATCTGGAGATTCGATAGCATCTGGCTGTACCGGTTCTGCGTGTCGACCAGTGTCCCCTCCAGAGATTGTttctgtgggagagagagagagagactgttagaaagacagacacagacagaatgagtgagagacagagagcaagaTAATACaagtgaaagagagaggatgagaaagaaagagtttagagagagagaaagagagagagagagagcactttTGTGTAGCGGCAGTGTTCTGCAGGGTCTCACCATGCTCAGCTGGGACTGTAGCTCTATCTCCAACCCCTGCAGGGTCCTGCGCAGGTCTGTGATCTCGGTCTTGGTGGTCTGTAGGGTCTCCGTGCTTGTCACCACCTCCTTGTTGAGAGCGTCGGACTGCAGAtcggaggagagaaagagataaaGCCATCAGACACAGAGCAGTGGATTCTGGGAAGGCACTGGGatgaaaatgtgaagaaaaacaggCAACCAGCAGagcaattgttttaaatggaacAGGGTCACATGTTGAACAAGACAGAGGACGGGGGGGACAGAGGACAGTATGaatgtaaatgtgtacattaCCTTCTCCTTGAACCAGCTCTCCCATTCCCTGCGACTCTTGTTTGCCATGCCTTCGTACTGCTCTCTGATCTCTGCCAGCACCTTGGACAGGTCTGTCCTGGCCAGGGTCAGCTCGTCCAGCATTCTCCTCAGCCCGGCGATGTCCGCCTCCACCGACTGCCGCATGGCCAGCTCGTTCTCGTACCTGCAACCATCGTAGAACAGAA
>TU18416
ttcttaaataaaaaacacagacaaggtgttttattttccaccaAACAAAGGTTTATTCTCCTGAGACAGACGCCTTATAGGACAGAACAGGAAATAGAAAAAgggtttgtttcagattttatcactctctctctcttttacttCACAAACAGCAGCTCATTTGAAAACACACTGAAGGGGATCGGCTGACTCATGTTGCTTTGGCATTGATGATTCTGAGGTATGTTTTGGAGAGACATGCTCAGCATTCGAATCAGAGCAGGTGGCATCACTCAAACCCCCAAGTGTGCAGGACTCTAACCCGAGCCTCGACTCCAATCTTTGACATTGCGCTATGCAAAGACCATGCATGTATCATTTAACCTTTTCTCAAGGGACTAAGTGgtgtcttttcttgttttgttttgttcttaacaGAGACGAGAGACATAGAGGTTACAGAGCACAGAGAAGTACTGCCGAGCTTAAGCTGTGAAGGAGGCAGATCTGTGGGCGGGGGGGAagcgaggaggaggaaggtGTCTGTCTGAGAGACTGTGGACCCCTGGCTTCTGTCTCTATTTGCTGGAGtggatggagggagagagagggagagagagggagagagagtggggaggCAGTACTCAATGAGCAACAAGCAGGGATTGTCAAGATGATGTCACATTCTAAACCTCTGATTTTCCAGCATAACTAAAGCTGCCATGGGTCTTGGTGGGCACCACCCCTCTGTGGGCAACACTGCTAGGAAGGATGAACTTAATTCTGCAGGAGAGACTGAAAAGTTCCTGTATGTAAACAACCCTACAGAAACTGTTACCGATCCCTAAGTCACCCCCCCAACACTGTCAACATGCACTTGGTAAAAAGACACTAATGGTTATGATCGCGACCTTCTGTAATCTGGTACATCTAAGCACAGGATCCAACCCACATCCTAGGCCTGACAGGTAACCAAAGACATGAGGAGATATCACAGCCCTACCCTCCCACAATCCCGCACTCCCTGTGCCCCTCCCTCCCACTCACCATGCTGAGCTGGGACTGCAGCTCGA
>TU18418
ttcttaaataaaaaacacagacaaggtgttttattttccaccaAACAAAGGTTTATTCTCCTGAGACAGACGCCTTATAGGACAGAACAGGAAATAGAAAAAgggtttgtttcagattttatcactctctctctcttttacttCACAAACAGCAGCTCATTTGAAAACACACTGAAGGGGATCGGCTGACTCATGTTGCTTTGGCATTGATGATTCTGAGGTATGTTTTGGAGAGACATGCTCAGCATTCGAATCAGAGCAGGTGGCATCACTCAAACCCCCAAGTGTGCAGGACTCTAACCCGAGCCTCGACTCCAATCTTTGACATTGCGCTATGCAAAGACCATGCATGTATCATTTAACCTTTTCTCAAGGGACTAAGTGgtgtcttttcttgttttgttttgttcttaacaGAGACGAGAGACATAGAGGTTACAGAGCACAGAGAAGTACTGCCGAGCTTAAGCTGTGAAGGAGGTATGGAGATGCAGCAGTCTGACTGAGGCAGATCTGTGGGCGGGGGGGAagcgaggaggaggaaggtGTCTGTCTGAGAGACTGTGGACCCCTGGCTTCTGTCTCTATTTGCTGGAGtggatggtggtggtggtgactGTGGTGGATCCCtctttttttgaAGGAGCCCTGCTCTCCTCTGTGTCCAGCAGTGTGCGGTAGGTGGCGATCTCCTGCTCCAGGCGTGACTTGATGTCCAGGAGCAGTTTGTACTCGCTGGCCTGTCGCTCTGTGTCCACCCGCACCTGGCTCAGCTCTGCCTCCAGCATGTTGATGGTGTTCTGGAAGCCGGCCAGCATGTTGCTGTAGCGTGCCTCTGTGTCCGCCAGTGTGTTCTCTAGTGCGTTTTTCATGCTGAGCTGGGACTGCAGCTCGATCTCCAGCCCTTGCATCGTGCGTCTCAGGTCTGTGATCTCTGTCTTGGTGGTCTGGATGGCCTCGGCGTCGCGGCGGCTCTTGTCGGCGATGCCCTCGTACTGTGCGCGGATCTCCTCCAGTACCCTGTTCAGGTCCTGCTGTGGCGCCGCGTCCACCTCCACATTCACTGAGCCACCAAGCTGACTGCGCATTGCTGCCAGCTCCTGCACAATACACAGCAGGCGTGAGTGGGATACAAGACGGCACACAGAACCGGTGCCTGCGGCTTAACTGGGCACAGACCCGCTCCCCCCAGTCATTGGCTCCTGCATCAGACAGGAGGTCTGTCCTGCAGCTTCAGATCTACTCAGAGCTACAGAGCTGCCTGAACATAACTCACCCAGCATCTAATTACATTGACATTCAAGCATGCCTTATTCAATGCTTTCAGTTATGATAAGTACAGTAATCAGGTCGAGGTTGGGGCGTTTCTACCTCCTCGTGGTTCTTCTTGAGGAAGATGAGCTCCTCCTTCAGCCCCTCGATCTGCATCTCCAGGTCTGTCCTGGCCAGGGTCAGCTCGTCCAGCATTCTCCTCAGCCCGGCGATGTCCGCCTCCACCGACTGCCGCATGGCCAGCTCGTTCTCGTACCTGCAACCATCGTAGAACAGAA

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18414 False 1416 lncRNA 0.49 2 26463782 26468099
TU18415 False 914 lncRNA 0.52 3 26430455 26432353
TU18416 False 1052 lncRNA 0.47 3 26466325 26468099
TU18418 True 1550 lncRNA 0.53 6 26430455 26468099

Neighbor

gene id symbol gene type direction distance location
AMCG00016630 eif1b,LOC105888686,LOC107549864,LOC103043673 coding downstream 48726 26380048 ~ 26381729 (-)
AMCG00016627 NA coding downstream 55853 26373019 ~ 26374602 (-)
AMCG00016628 NA coding downstream 86841 26339493 ~ 26343614 (-)
AMCG00016629 LOC108438403 coding downstream 121092 26304915 ~ 26309363 (-)
AMCG00016624 LOC107733370 coding downstream 215395 26212386 ~ 26215060 (-)
AMCG00016645 NA coding upstream 187489 26655588 ~ 26660740 (-)
AMCG00016642 NA coding upstream 193987 26662086 ~ 26664301 (-)
AMCG00016649 NA coding upstream 253688 26721787 ~ 26732090 (-)
AMCG00016648 NA coding upstream 275485 26743584 ~ 26749062 (-)
AMCG00016651 tbkbp1 coding upstream 348709 26816808 ~ 26822326 (-)
G14775 NA non-coding downstream 5205 26425032 ~ 26425250 (-)
G14765 NA non-coding downstream 35030 26394932 ~ 26395425 (-)
G14723 NA non-coding downstream 126996 26275177 ~ 26303459 (-)
G14650 NA non-coding downstream 331483 26097728 ~ 26098972 (-)
G14585 NA non-coding downstream 408192 25971786 ~ 26022263 (-)
G14832 NA non-coding upstream 54705 26522804 ~ 26523047 (-)
G14882 NA non-coding upstream 272986 26741085 ~ 26742338 (-)
G14943 nfe2l1,nfe2l1b,LOC107565927 non-coding upstream 511059 26979158 ~ 26983486 (-)
G14999 NA non-coding upstream 775867 27243966 ~ 27245247 (-)
G15001 hoxb5a,LOC104941372,LOC103365501,LOC108278507,LOC108413114 non-coding upstream 795614 27263713 ~ 27265603 (-)
AMCG00016623 NA other downstream 189065 26239082 ~ 26241390 (-)
G14676 NA other downstream 245677 26181744 ~ 26184778 (-)
AMCG00016616 sp6,LOC102212756,LOC101463567,LOC100707362,LOC107396441,LOC106564946,LOC103384358 other downstream 270533 26156521 ~ 26159922 (-)
AMCG00016617 NA other downstream 280912 26147510 ~ 26149543 (-)
G14637 NA other downstream 347288 26081503 ~ 26083167 (-)
G14843 NA other upstream 100570 26568669 ~ 26571641 (-)
AMCG00016643 NA other upstream 114427 26582526 ~ 26592300 (-)
AMCG00016644 NA other upstream 158608 26626707 ~ 26643493 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other upstream 527074 26995173 ~ 27003707 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other upstream 797788 27265887 ~ 27279334 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G452261 NA non-coding CI01000319 null 4665120 ~ 4761324 (+)