G14999


Basic Information

Item Value
gene id G14999
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27243966 ~ 27245247 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU18637
NNGtatttgggtttttgttttgttttttggcatcCTCGCCCACCCTTGCGTGCAtgtttctgtctgtccctctctccttccctctccccctccattGAAACAGAAGGCTGCAGATAGTCGTTTTCAGATTTGGTGAAGATGGATCCCTGTTTCATCCTTAATCATGCCAAACTCGGACCCATTTGTCATGTTTACTCTGCGGTACAAAGGACGAGCCGTATGCCTGCCATTACCCCGACATCCAACGCTCCCTATAACAAATGAGCCCCCGTTTCTTCAAGAAGAGCTGTTTTTTTACTCCCCTTTTCCCTCcactactaaaacaaaaaacaaaaagcaaacgaAAACTAAGGCGAGTTTTCTCTCAATATGAGAAGTTCTTGAAGAAGTGTGGGATTTTGCTTTTTGCTCGCGTTTCGCCGACACACAACACGACCTGGACTGAAGACTATTGTGAATACGATGTGAAGCTCGTCATATAGAAACTTGATTATCACTTTACGGTTTCCTACAAAACATGAAGtgtattaaaacaatgataAAGACACGTTCTTCAACCCAAAGTATGACAACGAAGATTATAGATTTCTAGATATTAGGGGACTTTCAACATAAAGAGCCAAATCCCGTGAACAGCAATGCATCTTAAACACAGCACTATATAGCTATACTTCAGCGTTTTAATTACctcagttgtatttttattgttattttgtcttgttttatgaATGATATGGTGAcacttttgattttatttttatataattattattttttttccttgaaagTATTCGGAATTAGTCATTTATTCGTTTCCTGTACGTTCAGTGTAATTTAAGTGCAAATGTGCCCATGAATATAAAGAACAAAGGTGCGTAAGAcaagaatatattttctgttttaaaatatatatacttcatattttttattcttctctctatcctggtctctctctctctctgtctctctccctctgactctccttctctctttgtctcgcTCCCACTAAGAGTTTGggcatttgtgtttaatacttaaaatattttccttttacattCCAAAGGACAGCCCTGCCGCTAATGTCTCacaggagatttttttttttttttttgtagagcgttttttttcttgttctccGTGTATCTAccttaatatttgtaaatagaaatagaaataaataaaatgaaaaaagaacgaaaaaagaaaggaaataatttCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18637 True 1220 lncRNA 0.45 2 27243966 27245247

Neighbor

gene id symbol gene type direction distance location
AMCG00016665 LOC105013251 coding downstream 24242 27217458 ~ 27219724 (-)
AMCG00016664 hoxb2 coding downstream 31044 27210523 ~ 27212922 (-)
AMCG00016667 NA coding downstream 49065 27187836 ~ 27194901 (-)
AMCG00016658 copz2,LOC107740614,LOC107662379,LOC107585036,LOC105013247,LOC106607483 coding downstream 269315 26967410 ~ 26974651 (-)
AMCG00016656 LOC107677865 coding downstream 297402 26940980 ~ 26946564 (-)
AMCG00016666 hoxb4,hoxb4ab coding upstream 2313 27247560 ~ 27247997 (-)
AMCG00016674 NA coding upstream 40966 27286213 ~ 27286461 (-)
AMCG00016673 hoxb8,hoxb8ab,hoxb8aa coding upstream 41627 27286874 ~ 27290861 (-)
AMCG00016672 hoxb9ab,hoxb9,hoxb9a,LOC106600835 coding upstream 54356 27299603 ~ 27313173 (-)
AMCG00016669 hoxb13aa,hoxb13ab,hoxb13 coding upstream 92760 27338007 ~ 27339593 (-)
G14943 nfe2l1,nfe2l1b,LOC107565927 non-coding downstream 260480 26979158 ~ 26983486 (-)
G14882 NA non-coding downstream 501628 26741085 ~ 26742338 (-)
G14832 NA non-coding downstream 720919 26522804 ~ 26523047 (-)
G14818 NA non-coding downstream 775867 26430455 ~ 26468099 (-)
G14775 NA non-coding downstream 818716 26425032 ~ 26425250 (-)
G15001 hoxb5a,LOC104941372,LOC103365501,LOC108278507,LOC108413114 non-coding upstream 18466 27263713 ~ 27265603 (-)
G15016 hoxb9 non-coding upstream 50838 27296085 ~ 27308958 (-)
G15066 NA non-coding upstream 149872 27395119 ~ 27398583 (-)
G15071 NA non-coding upstream 167753 27413000 ~ 27413229 (-)
G15073 NA non-coding upstream 170406 27415653 ~ 27415892 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other downstream 240259 26995173 ~ 27003707 (-)
AMCG00016644 NA other downstream 600473 26626707 ~ 26643493 (-)
AMCG00016643 NA other downstream 651666 26582526 ~ 26592300 (-)
G14843 NA other downstream 672325 26568669 ~ 26571641 (-)
G14816 LOC108438405,LOC108438407,LOC107666325,LOC107563033,LOC107666324,LOC107753907 other downstream 723569 26427339 ~ 26520397 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other upstream 20640 27265887 ~ 27279334 (-)
G15026 NA other upstream 124343 27369590 ~ 27370139 (-)
G15067 NA other upstream 156429 27401676 ~ 27403922 (-)
G15076 NA other upstream 179646 27424893 ~ 27428651 (-)
AMCG00016712 NA other upstream 884765 28130012 ~ 28157200 (-)

Expression


Co-expression Network