G15001 (hoxb5a,LOC104941372,LOC103365501,LOC108278507,LOC108413114)


Basic Information

Item Value
gene id G15001
gene name hoxb5a,LOC104941372,LOC103365501,LOC108278507,LOC108413114
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27263713 ~ 27265603 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU18640
TTGTTTactagggggtgggggtggggggtagagGCAGCAATAAAAATGGAGAGTGAAAAGGAAAGAGCAGTGAGAAAAACAGAGGAGTGAAACGTGATTTGGGTTGAGGAGAGCAGTGTAGCGATGGGGGACTGGAAACTGTGAGAAACTGATATGACTGGACCAGATGGGAAAAGGGCCCGAACAGCGTACACCCGTTACCAGACCTTAGAGCTGGAGAAAGAGTTTCATTTCAATAGATATCTGACCCGGAGGAGGAGGATAGAGATAGCCCATGCGCTCTGCCTGTCGGAACGGCAGATAAAGATCTGGTTCCAGAACCGAAGAATGAAGTGGAAGAAGGATAATAAACTCAAAAGCATGAGTCTGGCCACAGCGGGTAGCGCTTTTCAACCCTAATGTACactaagattatatatatatataaatattatatcaGTAACTATGTGgggggtgggagtgggggggggggacgacaaaaaaaaaacaagaaactaaaaataacacTATTCTGAACCCGGAGTCCTGTACAGCGAGGCACATTCTGGCATGCTGTTGATGTTTTAgacaaacttaaaaaagaaaagaaaagaaaaatctgctgTGGTACTGCTAACACAAAACGTGTGTTtatctgttgttgttatttttttaaatgataattattcttactattatcattattgttattattatttgataagGGAAGAAAAGGCTCCCCAGTGCccgttgttattgttataaatatCGTTTATGTGTCACGTGCTATGTTGATGCTTTCTTGAAAGTTAGCATGTTTCCTGTGAGCTCCTAAATGTTATAACTTATTTACAATCTATAACAACTGTATAGTTTTAAGTTTACAATCTAGACACTCCTCTGCCCAGGGTTTTAAGCTAGACAGAAATTGCGCGGCTCTTGCAGATCTGCAAAAAGCCTCTGTGTTGTtctatcttgtttttttttttttttttttttttttaattatgattctGTTTTATTCCGTCATGTCCTACAAatctatggttttattttattttatttaaaaaaaaataagacatgtAAAAAATGCCGTCTAAATTCCTGTCTCCGTTGCTACGTGTGTATAATTCTATTCGAAAatgatatttgtatattattggATCATTCGTACGTTCCAGCAAGGATGTATATATTAGACATTTTTAATGTGACCAATAGGCTATCTGTAGTGGGCAGAGTGAATGACAAGCGTTCTGTGAAAAAATGGCAACCGTCACGTCTGACTGCCTGTAAGCATTTTGCCAATAcgctttttgtatttgtttgtagcTTAACTTggagtaaaaaataaagtttctcTTATTCAGA

Function

symbol description
hoxb5a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development and cell fate specification. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; mesenchyme; mesoderm; neural tube; and somite. Orthologous to human HOXB5 (homeobox B5).

NR:

description
PREDICTED: homeobox protein Hox-B5a-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18640 True 1350 lncRNA 0.38 2 27263713 27265603

Neighbor

gene id symbol gene type direction distance location
AMCG00016666 hoxb4,hoxb4ab coding downstream 15716 27247560 ~ 27247997 (-)
AMCG00016665 LOC105013251 coding downstream 43989 27217458 ~ 27219724 (-)
AMCG00016664 hoxb2 coding downstream 50791 27210523 ~ 27212922 (-)
AMCG00016667 NA coding downstream 68812 27187836 ~ 27194901 (-)
AMCG00016658 copz2,LOC107740614,LOC107662379,LOC107585036,LOC105013247,LOC106607483 coding downstream 289062 26967410 ~ 26974651 (-)
AMCG00016674 NA coding upstream 20610 27286213 ~ 27286461 (-)
AMCG00016673 hoxb8,hoxb8ab,hoxb8aa coding upstream 21271 27286874 ~ 27290861 (-)
AMCG00016672 hoxb9ab,hoxb9,hoxb9a,LOC106600835 coding upstream 34000 27299603 ~ 27313173 (-)
AMCG00016669 hoxb13aa,hoxb13ab,hoxb13 coding upstream 72404 27338007 ~ 27339593 (-)
AMCG00016670 LOC106579309 coding upstream 105376 27370979 ~ 27375700 (-)
G14999 NA non-coding downstream 18466 27243966 ~ 27245247 (-)
G14943 nfe2l1,nfe2l1b,LOC107565927 non-coding downstream 280227 26979158 ~ 26983486 (-)
G14882 NA non-coding downstream 521375 26741085 ~ 26742338 (-)
G14832 NA non-coding downstream 740666 26522804 ~ 26523047 (-)
G14818 NA non-coding downstream 795614 26430455 ~ 26468099 (-)
G15016 hoxb9 non-coding upstream 30482 27296085 ~ 27308958 (-)
G15066 NA non-coding upstream 129516 27395119 ~ 27398583 (-)
G15071 NA non-coding upstream 147397 27413000 ~ 27413229 (-)
G15073 NA non-coding upstream 150050 27415653 ~ 27415892 (-)
G15074 NA non-coding upstream 150646 27416249 ~ 27416539 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other downstream 260006 26995173 ~ 27003707 (-)
AMCG00016644 NA other downstream 620220 26626707 ~ 26643493 (-)
AMCG00016643 NA other downstream 671413 26582526 ~ 26592300 (-)
G14843 NA other downstream 692072 26568669 ~ 26571641 (-)
G14816 LOC108438405,LOC108438407,LOC107666325,LOC107563033,LOC107666324,LOC107753907 other downstream 743316 26427339 ~ 26520397 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other upstream 284 27265887 ~ 27279334 (-)
G15026 NA other upstream 103987 27369590 ~ 27370139 (-)
G15067 NA other upstream 136073 27401676 ~ 27403922 (-)
G15076 NA other upstream 159290 27424893 ~ 27428651 (-)
AMCG00016712 NA other upstream 864409 28130012 ~ 28157200 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location