G15079


Basic Information

Item Value
gene id G15079
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27535325 ~ 27541840 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU18755
ACCTCTGTTTAACAgacaagcattttatttttatttgcagagatcaatactaaacaaaaacactcgAGTAAAGAATACGAACTTTAATAAAAACCCAGCAACGTCTTGgttatttacaatgtttgtttCTGAAAGCTATGCACAGAGGCGATCAAATGTTGCATTGATTTTGTACAGATCTTGCTGTGAATAGGACTGTTATCCGACCTGGATGCAGCTGCAGGGTGTGTAGAACGAGCAAGACGGGGGAAATATCGCAGACCACTCCGTGCATTTCCATCAGACCAAAAACCCCAAAAATACCTGATTTATATATGCCTTCATTCATGTATTACTGCTTTCTACCAAACGTATCACGTAGGAAACAGGCCTGAAATAACGGAATAGATCGTCCCTCTCCAgctgcaacacaaaacaaatgtaatagcTTGTAATCTTAGCGCTCTATCAGCAAGCATGCCCAGATGcctaaaacaagaaataaaacactggCCAATTGACCTTGCTCAAAAATATGCTGAAAAAAGAATCAGTAAAATTAACGATTCAATTGCACAAGCTTTCCTCATAATGGGATAGGACTGGCATTAAAAACACAGGGAGCATCACAGCTAACAGCTCAGGGCGCAGCCTTCGGTCTGACAGTAGTTGGAAATCAAGAAGCCAAGAGGTCCTGCAAACAAGCTGTCCCAAGACACCGTAAAGGGTTTGAAAATAAGTAAGATCCGCCCTGCAGAGAGATGCTGTCCTTTCTACCCGAGACTGGGAGAAGAACCAAACCAAAACGTAAAACGTGTCTCTCAGTCTGTCTGCACCCACAGGCCCATCGAGTTTCGCGATGCAGTGTCgattaaacacaaacaacctGTGGAGGGATTTGCTGCAGTGCTCAGTCAACATCTCAGTAGAGATTAAAagatgacccccccccccctcgtaccctcctcttcctcctccaaaTGTTAGCTGTGATGCCTTGAAACTATAGAAACCCCAAATTAGCAGACACTCAATAACAGAGCAGACACCTGTGCCCCAGGCCTGGGTTTACACCTCGGATTTCAGCAGCACAGCAATCCAATTCAGTTCCTGCCTGACTGCAGCGACAACACAACGCCTCAGTGCAGAAGCACTGAACACAAACCAAGAGCAGCCCAGCTGCACAATCAAGAACACACAGCGGATACGCGTTCAGAACAATTCCCAATTCCCACAAGCTgacattttatactgtttattcATAAATACTGAATGCTGTTTTGTATTGGAAATGGAAGTGTTTAAACCACATTTTAGACTATATTTTCAaggggttgtgtttttttgcctccaatacattttctttttcaaactcCAAATAAAAGCCAGATAGCTTCccatacacacagatatatctatgtgcatgtgtgtatgttttaaaaaataccataaatgtattttttaaatgataatctTCACCAATGTGGCATCCAAAGATTCTCTTAATATTAAAGGAGGGAAATGTTATGATTTGTTGGATCACACAAGCAGTCTTGTTAGTGATGATCTCActggaaaaacacaatacacacaaaatcGTCCAATGACTTAAACCCACCTAACAGTTGTGGTCACATGGTCATTATTGCAACCATGAATGGGAACTAAAACATGAGCAGGGTTggagagggaaatggaaaaaaaactaaaaaacaggtTTATAAAATCCAAGAttttatcaaacaaaaaaaaaagtgaacatgttgttctttttggttttgtttgctcAGAATATCCCTGCTTTGTCAGTGAAACATCAATGAAGGCACTATGATTCTGACAGACGAAAAGAGACAGAGATCCCTGGGACACTTACAGGGCAGACTCGAGGAGATTACAGTTTTATTCCATCTACACAAATGTACAGGATTGTTTCACCCTCTTCCTCTCAAATTACAACTTCCAATGGCTGGGTTAACGAGCCATCGACTCTATACATGACTTGACTGTCATAcatgcccccccaccaccctcacACCACTAAGTCGCTGTATAGCAGCCAACCTGACAGTCAGAGATCTGCTCTAGGGTGTTGTTTTGTGGTGCATTTTGTTCTCAGACTATGCCAAAAAAAACAGAGAGCGATCAGTCACAGCTGGACACGTTGTACACAACAGtgatgagaaaaacaaacaaaaaaacagaacttaTCAAAACATGAACAACTcaaatgatgtaaaaaaaaaaaaaaaaacctgaatggTATCAACACCTTAAACAGAGGAACATGCATTCAACAGGTACTCTTCCCTCCTGAAGATACAGTGACAGTGCTACAGCTATCagactatttatatatatatatatatatatatacacacatttattttcatccatatcattttaatggtggTGTATTTTGTAACATGCTCCTCTTctctgggttttattttttccaacaaACATAACAAGTGAGTAACTGATCTTACTGTATTTCACAATTTGATACCACAGACAGGAGAAACTGAACAGAacaagtgtaaaaaaaatatatactctttaaaaaatacaggagACCGAGAACTCAAGAGAGAGGGGGCGCTTATCTGGGTTTCCAGAGTTCCTTAGAACAAGtctgttgctttattttttagctTTTAGTTTTAGGATCTTTCAAGGTACAGTGGTcaaacaagataaatatatatacatgagcACTATAGTAACCCAGGCCATGAAACCCTGCAAGATTCTGTCACACTCAGAacgttttattttgaaaggctATTGCAACTGAATCCTTCGCCATGTGAAACATTCATATCAAAAACCAGGATTCTCAGATTTTGGATTCTCCTTTGTAGAGTTTTAAAACCCCAAAATTTTATTCGAATTTTACTCCTACCCAGTTTCCCCATTCCTACTTGTGAAAGGTGAAGTATCCTTTCCCAGAACACACTgcagcattacattttacagaggGGTGCTGCTCAGGCTCCGGtctgcatgcgtgtgtgtatggTCCTACGGATGTACAGATCCACGTCACTGTACagattcccccccacccacccacccaccaaccaacccacccacccaccacaAAAAAGGTGCAGAGTACAGAAATTATAATCCCCCTTTACATTctatacacacacttacacgGGTGCACCCTGTATTTTAACATGCACAAGAAACAAGCAGAAATAGAAGCTTCCGGGGGCAGAGGTCAGACCCCACATTCGCACACTAAGCGATCCGCTCATCCTCAGACCGGACCCCTGCGGCACACTGGGCACTGTGACGGCACGCCTCGGCAGCACTGCGATCGTGGAGGGCCGTGGTGGTGGGGTGTGGGGCTCTCGTTCTCAGGCTGCAACACGTGCAACAGCACCGCAGGAACAAGGAAGAGTCCGGAAGGAACAAAATCAGTCCCCCcccataaaaaacaacaaccttctTCATACAACAGCGCTGCAGCACCACTCCAGAGCCGGACCCCCCAGTGGAGACCAAGGCTTCCAGCTGCCGCAGCACCACCAGTCTTTAGGAGTGAACCACCAGTATGGTTTTCCTTCTCAGGTCTTCCTACTTAAAggagattttaaaaacagacagttctatcttgtttgctttcttgtttAGATCTTTTCTTGCCCTTGCCCCCCAGGTCCACAGAGCAGCCTGCAGGCTCCTTGCTCTGGATTTGCCCCTGTGCCCCCCCAGTCACCCCACAGAGCAGGCCTGCCCACTGCCAATGCAGTGGGATCTCACAGGAACGCTACCAGTACCGTGCTACATCAGCAGAGCGGGGGCAAGGTGGTCTGCGTACGTCCGCCTCCCCCAACCCCTCCATCCTCGAAATCAAAAtgtcttttgttgtttgtttgcttgcttgcttttcGTCTCCCAGATCCTTTTGTCCATTGATAAGGATAGGTTTTAGTTctctacaaaaaaacaaaaacaaaaaaacatccaataaaactaacccccccccccacggggggggggggggggggggggcagcacaGGAGAGATCTCGGCGGGCAGAGGCAAGGCAGACGTCTACACGGCTGGCGACATGACATACAGACACAGccgagagagggagacaggaagaATAACAACGAAAAAACCAAACACTCCCACAAGCCTGGTGCCTCTGGCGAGTATGTCAGAGTCCATGAGCACGGTCAGCCCAAAGCCCCCTGCTCTTTAACCCGACCGGCTCACGAGAATCAATCAAGGCAGGCTAGCATTCTTAGAAATACGGTTTCGTGTCAAAAGGATTGATCAGAGAAcagaatatttaattacaataaaaatagtgGGAGTAAAAGGCTTAGGGAGTATTTAGGTTTGGCTTTTTCTagttgtcattttaaaagtatatgcACATCCTCTACTTCAATATGACTTTACTAGATGTCAGACATCCCTCTTGCATAAAAACATGAATGCAACTGCTTTTGTCTTCACGACAGATAATTATTACAGtcataaaacttaaaaaaatttaaGCCAAAGCACAGTTTTGTTCACATCTTGTGCCTACGGTCAAAGTTCATGAGGTGAAGCCAGCAGAGagcatgttttcaaatgtttcgTGGGGCTCTGGCCCTCCATGCCCTCCTGTGGGAAGACTATCTGAGAGACAGGCTCTTAGCAAGGGCTTTAGAACCGCATTAATGATCCTCACCAGCTGCCCCAGTGGCTCACTGCGATGTTCCGAAATGGGCCGCCGGTACCGGCTAACATACATGAGCATCTTTCAAGCACAAGCCGAGAGAGGCGTACAGGAATGACAAAGAAAAGGGAGACTCCTAGCTGTATCAGCCGGCACTCACAGCTGAAGAAGAGAGGCTAAGCATGTGTCTTTCTCCAACGCAAAGAATAGCTTTATTCAGTCGTTTAGACAAAGACCTGACCCTATTGCcctctgcaaaaacaaaataaaagtgttgtGTATTGTACTTGCATTTTGAAGACAGCGCTTTCTGTGAAATTCTCACTCCCCCTTCTCCTGCACCTGGGTACCatcttgaaatatataaattgcaaaGATGTAATGGCTCTGCTTGtgcctctctcacacacacacacacacacacacacacacactgcagcagctcAGTGGGATTAAAACTCACTGCTTCGGCCTCTGTACGTTTACTTTGGACAAAACATGATTAGTTTGTGACCAACCTCTGGATGGTGTGACAGGGATGTGCCTTGTATTGTTGGGACAtgattttctatttattctaccaccacccctccctcctcctAGAACTAATTTTGTGGTTGCAGCAACTGTAGGCAGTACAAAGAGTTTCAGAACTGCTCCCATGCTATACGAGGCATTCACACATGCGGTGGCCTGCACTTGACACAATAGGGTGCGTGGTGGTAATTAAACAGGCCCTCGGTTTAACCTGCTGGCTTGCAAGACGTGAATTGATCTGAAGAGGTCTGAGTTTCCCAACAAACACTGGATAGGAGAGTCCCAGCTACACACAGCTGTGGAGGAAGTCCCCCCAGCAGGACAATAGGCATGGGGCGGGCCATGGTGACATCATCAATGggagtggaaaaaacaaaacaaaaaaacagtggaCTTACTGTTGGGTCAGTTTGGGCAGCGGCCGTCCAAAAGCAACTACTGGCAGGAAGGGAGTGATCATCAGGGATTCCACtggagaagagagacagagaaagacatcAGGAGACTTTCCCCGAGTATAGGATGGTGTTTTCTTGTGTGCGTTTTGCTTGCTGTTCCAAGCAGTCTGCCGTGTTCAGGAACTCTTTCGATCCTGACGTCAGATTCCCTGAACCCAGGCGCTGCCACCCAGCCCCATTCCCTGGGCCCTACTTTACAGCAGCCCTTGGCGCAGGGTGGCCCAGTCCTGATGCTGGAGGGCTGCAGTGCAGTCGCCTTCAGGTGTTGTGAAGGTGCTCAGGTGAAGCAAAACATCATCTTACTGGCATTACTCGGCCCGGAGAGTGGCGGCCATTTACATAGAGCTGGGGAGCCTTGCAGCACCAGGACtggggaggaaggggggggtggggaggggagaAGGGCAAGGACACCACACCACGCCAGCATATCACCCGTACCGTCATCGGCGTCAGGGTAGAAGGACGAGACCTCGGGCTCGCTCTCCTGGATGCCCTTCTTCTTGTACATACGCTGCTGCAGCCGCTGGAACATGCGCTGCTCCCTGATCCGCTGGATGTCCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18755 True 6230 lncRNA 0.35 4 27535325 27541840

Neighbor

gene id symbol gene type direction distance location
AMCG00016688 nr1d1,LOC102302421 coding downstream 18352 27509645 ~ 27516973 (-)
AMCG00016681 snf8,LOC107734219,LOC107692042,LOC107554070,LOC107584075,LOC107660854 coding downstream 101465 27430102 ~ 27433860 (-)
AMCG00016675 ttll6,LOC107582749,LOC107727303,LOC107666932 coding downstream 154237 27375965 ~ 27381088 (-)
AMCG00016670 LOC106579309 coding downstream 159625 27370979 ~ 27375700 (-)
AMCG00016669 hoxb13aa,hoxb13ab,hoxb13 coding downstream 195732 27338007 ~ 27339593 (-)
AMCG00016692 NA coding upstream 101799 27643639 ~ 27650849 (-)
AMCG00016693 LOC107388104 coding upstream 113908 27655748 ~ 27669412 (-)
AMCG00016694 LOC105013104 coding upstream 159172 27701012 ~ 27707529 (-)
AMCG00016695 NA coding upstream 190475 27732315 ~ 27738429 (-)
AMCG00016700 NA coding upstream 264509 27806349 ~ 27809112 (-)
G15075 NA non-coding downstream 110504 27424554 ~ 27424821 (-)
G15074 NA non-coding downstream 118786 27416249 ~ 27416539 (-)
G15073 NA non-coding downstream 119433 27415653 ~ 27415892 (-)
G15071 NA non-coding downstream 122096 27413000 ~ 27413229 (-)
G15066 NA non-coding downstream 136742 27395119 ~ 27398583 (-)
G15095 NA non-coding upstream 8472 27550312 ~ 27553162 (-)
G15165 NA non-coding upstream 252752 27794592 ~ 27794980 (-)
G15166 NA non-coding upstream 254943 27796783 ~ 27797008 (-)
G15172 NA non-coding upstream 260289 27802129 ~ 27805042 (-)
G15169 lsm12,LOC107708984,LOC101168777,LOC107562026,LOC107693683 non-coding upstream 268798 27810638 ~ 27815464 (-)
G15076 NA other downstream 106674 27424893 ~ 27428651 (-)
G15067 NA other downstream 131403 27401676 ~ 27403922 (-)
G15026 NA other downstream 165186 27369590 ~ 27370139 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other downstream 255991 27265887 ~ 27279334 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other downstream 531618 26995173 ~ 27003707 (-)
AMCG00016712 NA other upstream 588172 28130012 ~ 28157200 (-)
AMCG00016732 NA other upstream 1239632 28781472 ~ 28785507 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other upstream 1660032 29201872 ~ 29225587 (-)
G15706 NA other upstream 2659619 30201459 ~ 30202351 (-)
G15787 NA other upstream 2984452 30526292 ~ 30529500 (-)

Expression


Co-expression Network