G15095


Basic Information

Item Value
gene id G15095
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27550312 ~ 27553162 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU18775
GAGCGAGTGAAAAATGATACCGGGTGCACTATCATGAAAAGCTTTACAGTAAGCCGCCGAGAATTGCATTTACTTATGATCGTGAACAAGAGTTTCGTTTCGTATCCGTGCGGTTTTTGGGTTTCTTCTAACGACCACAAGCGCAACCCCCGGTCATTGCCCTCGCATTTGAACATTCGTGCGCAAAGCCGCCCCCTAGCGGCCGGCGGGCAGACTGCGGACTGACTGCAGGGGCAGCTGCGGCAGAGCgtcctgccccccccaccccaaaaaataCTGCTGACAAGACAAACTGCATTtttcaattgttatttttaattttttctccaCCGTTTCTccacaaagaaaatattacaaattcacaCCTATAAAATACACAAGCCATCACAGTGTTAACTGGTCTAGAGAGAAATTCAACTGATATGTAAAACCAACAAGACATGGATCCAATCTTTAAGGCAGAGAAAGTAGACGTTTCCTTCTTGAAACAATGTAacattaagaacaaaaatacctttaaatcaataatactTAATATTGTCAGGTTGCGTttagtgtaaaaaaaacaaatgaaaggtCATTCCTAGGGTTTATTTTTGATAATAGCCTAGAGCTCTGCCCTCCCCCACCTAGTTCAAACAGAAGGAACGATGAAAGTGTGCACGTTATTCTTGTCCTGTACAGGTCTGTGTGCATGCAAGCAAGGTCTGCGGAGAAGGAGAGTGTGAGGAGCTGCACTTCAGTCACTGAACATGGGAGTACTTCCCAGCCCAACTGCAGCTAGTTGTGGACAGGAGACCCCCACTCCACCCTTCACTCCCCCGATGCACAGAAGGGTCTCGCAATGAAAAACATTCATTTCCACTGGAAAAAAGGAACGAAAATccatctaaaaaataaattataataaacaggTAATCATTCTTCCCACAACCAAAATCACACATCTACACTCTTCCCACCAAGGCAAGCGGTTTAACGCCTGCAGCGAAATAACGCTAAAAACTATTCCCACTGGCCACAGCTCCGACCCCCTAGACACGTCAGGAGGAGGTCCAACAAAAGCTGCTGCAAAAATCAACAGCTGGGCCAGTAGAGGAGGCAGACAGTCTCGCAAACACCCTGTGCACAAGAACAATTACAGCTACAGTGGAGGCCAGAGGGTGCAGTGACCATTGTGCCCACCAGAGACTTTGGCCCAAGCACCGTACAAGTCTGCTGGGACaatgaatattttcaaataattgtttcttCTTCTCAAGCACAGAGCCAGATCCCAACAAGAGAAGTTAAGCGCTGTCGAGTCCACTGCCACCTCTGTAGCGCTGCACTCCAAGGGCAGGGCTGGGCTGCTGCACTCCGAGGGCCACAGGAGGCCCAGAATTACTAAACCGAAGTAGTCTTATCGCGTTTTAATCCATTCCTCACCGAGAGGTGAGTGGGGGCCCTTGAAAAGCAGTGGCAGAGTGAAAGTTAGCCTCTGCGAATCTCTGGAGACATCCGTGACTTATTCCTTTTGTTTAGACTCATACActcaatgtaataaaaaaaataaaaaataaaacattttttcatacatacataaaaaattaaaaaattctATGGTCCTGCTGAGGGTTTATACAGCGTGCAATGCTCGAGGAGTGGATCGGGACCTCTCCCTCAACGCCAGCTAGGTGTGCGACTGACCACGGGCCCGGTGGTCACAGACCTTCAGTGACCAGGAACAACTGGAATTCAGAAACATATNNNccccccccccacgcctCGCAGCAGACAGTAAGTGGttacattaagaaataataataaagaaaaaaaaaacgaattaaacTGCAGCACACCTCCTGAATGAAAGAAGTCTGGTCCGGCCCGCCAATCATCTGAGCTCCAGGGCCGACTACAGCCGGGGGGGTGTTTCTCCAAACCCATCAGTGCCATTCAACTGCAAAATCTTCACATGGCGTTTAAGACTCTCACACGTGGGAGTTGGCCTCGGATGTAGGGATTACGCACTATGCTCTGCCAGTCGAGCCCTGtgtacattttttcattatttgtttttccgaGATGCGAGAACAGAAGGGCTGTAGGCTGGTCCCAGGTCTAGCTACACCAGAGGGCTTCTGggtaatggggggggggggataaaactGACATTCGTGAACACTGCATATTTGATGTAGTTCATTTCTGCTAAATCAAGGAAACAattaatccaaattaaatataaatataaaaattcaGCCACTTAGGAAACATTAAGTGATTGCTCTTAAATGAAACATTAGGTTTTGCTCAAACTGATCCTCAAGTAAAGGATAAGACGCTATGCCATGTTAAGCCAGCAGAGGGAGCCTAGCAGGGACAGAGCCAGGACACATCAGGTCCGTCCGGTCACTCACTAGCACCAGGGGAACACGGGCCACCGGGCTCAAACAGGCCGTCTGCTACAGCAATGTCGCGACTCTCGCCCCTCCACACCTGAACACAAGACTAACACTTTCTTAATGAAGAGGGTTTGCACTATGAAGGCTTGGGAGAAAGCGTGCTTTAGATTTGTTGGGTGCGTTTTGTTCTTTcatcttccaaaacaaaaaaggaaaactgggTTTCTTCTGCGCGCTGCTGGCTGTTCAGTACACTGAGCTAGGAGCCCATCCTCTCCTCTTGTGCCAGCCGGTTCCTCTCAACCTGGAACAGACACACAGGATCAGTACACGGACAGATGCCCGAGAGAGAGCATGCAGTCAACCGCGGGGGCATTCAAAGGGGGCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18775 True 2776 lncRNA 0.47 2 27550312 27553162

Neighbor

gene id symbol gene type direction distance location
AMCG00016688 nr1d1,LOC102302421 coding downstream 33339 27509645 ~ 27516973 (-)
AMCG00016681 snf8,LOC107734219,LOC107692042,LOC107554070,LOC107584075,LOC107660854 coding downstream 116452 27430102 ~ 27433860 (-)
AMCG00016675 ttll6,LOC107582749,LOC107727303,LOC107666932 coding downstream 169224 27375965 ~ 27381088 (-)
AMCG00016670 LOC106579309 coding downstream 174612 27370979 ~ 27375700 (-)
AMCG00016669 hoxb13aa,hoxb13ab,hoxb13 coding downstream 210719 27338007 ~ 27339593 (-)
AMCG00016692 NA coding upstream 90477 27643639 ~ 27650849 (-)
AMCG00016693 LOC107388104 coding upstream 102586 27655748 ~ 27669412 (-)
AMCG00016694 LOC105013104 coding upstream 147850 27701012 ~ 27707529 (-)
AMCG00016695 NA coding upstream 179153 27732315 ~ 27738429 (-)
AMCG00016700 NA coding upstream 253187 27806349 ~ 27809112 (-)
G15079 NA non-coding downstream 8472 27535325 ~ 27541840 (-)
G15075 NA non-coding downstream 125491 27424554 ~ 27424821 (-)
G15074 NA non-coding downstream 133773 27416249 ~ 27416539 (-)
G15073 NA non-coding downstream 134420 27415653 ~ 27415892 (-)
G15071 NA non-coding downstream 137083 27413000 ~ 27413229 (-)
G15165 NA non-coding upstream 241430 27794592 ~ 27794980 (-)
G15166 NA non-coding upstream 243621 27796783 ~ 27797008 (-)
G15172 NA non-coding upstream 248967 27802129 ~ 27805042 (-)
G15169 lsm12,LOC107708984,LOC101168777,LOC107562026,LOC107693683 non-coding upstream 257476 27810638 ~ 27815464 (-)
G15200 NA non-coding upstream 330477 27883639 ~ 27884430 (-)
G15076 NA other downstream 121661 27424893 ~ 27428651 (-)
G15067 NA other downstream 146390 27401676 ~ 27403922 (-)
G15026 NA other downstream 180173 27369590 ~ 27370139 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other downstream 270978 27265887 ~ 27279334 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other downstream 546605 26995173 ~ 27003707 (-)
AMCG00016712 NA other upstream 576850 28130012 ~ 28157200 (-)
AMCG00016732 NA other upstream 1228310 28781472 ~ 28785507 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other upstream 1648710 29201872 ~ 29225587 (-)
G15706 NA other upstream 2648297 30201459 ~ 30202351 (-)
G15787 NA other upstream 2973130 30526292 ~ 30529500 (-)

Expression


Co-expression Network