G15172


Basic Information

Item Value
gene id G15172
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27802129 ~ 27805042 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU18858
ggagtgttacatttgttgttgtgttgtttttgtcttccaaaaaataaaattcaaaggaaaagaaaattacaaatttaacACCATCTACAACACAAGACTGGTCGTTCACCACTAAAGGGGTAGAAAAATTCGCATCAACACTTTGTGTCATCAACTGAatgagttttaattaaataatacaattttaaaaaagcaagaaGTAAAAAAAGTTGAAGAATAATTTTTCTAACCACAAAAGGAAAAGTgttgatatttgttttcctcccatCCTTAGGAAacaattttattaaaaccatgttagcataatttgtatttttcttactCTGTGCCAAAAAATGAACTGCACTGAAAGCGATCTAAGACCTTTATGGATGCCTACAGAACTGTACAGAAGTGTGATGCTGCGGTGAGCGTGCACCAGTGACTCTTCACAGCCATGGCTACAGATCGGTGGCCTCTACAAGAAAAAAGCCGTGCTCATCTACACACCTGCCCCCTGAGATGCTGTGGCAGCACAGCCCCCTACTCAACCACCATCCCCCAGAACAGAACTCTTCCtccaaatgacaaaaataacaaatatccccccctaaaaaataaaacgtcCGATTCTCACAGACACTTTCTGTACCCCTGAAAGACCCCTCCTGTACACACCTCTACACCTCCCCCACCTGAGTGTCCAAAACAATATGGCTGACACCCTGCCGAGTATATATAGTCGCGGGAATAGGCAAGAGAGTGACAAACTGTACATGATTgttatacacgcacacacacgtacatatccatacatgtttaaatgaagggggggggggcatttctgtctttctcccaacagaaacagaaacatatcCTGCCATGTTTTCATCCAGGAGCAAAGACACACATGAAAAACAGGCATGCTTGTGCTGCTCAGACATGGGGGGGGTTGTTGTATTGCTAGCCCCAGGCACATCGGAACGGAAAATGACCGAGAGGGGCAGGCAGGTAGTTTgagatggggggagggggtggtggtggttgtaGGCAGGGTCTTTGTAGTGCTGGGCCCTTGTGTGAAGCAGGTGAACAGACTGTgtgctatatttatataaatagatctctgtgtgtgtacagtatatagacactatatattatatacagttaaGATTTGTGCATGcgtgcacacacgcacatgcacacgcaggGCAGTTCTGCACACTGGGGGAACAGTGTGTGCCTGACGCAGAGCACCCTGGGAATCAGTGCGCACCACAGAACACACTTCCTGTCCACTGTGTGTAGCCCTTactccctctttccctccctcttcctcccagTCTCTCACACTTTCAGATTGTAGTCTTCACCCCCACAGTACTGGGCCTGGGCTGGGTGCGATTTGGACTGCACTACATATGCAGCACAATGCAGTTCAGAAATTAACTTTAAAGCAGAGGCTGGTCAGAGTATATCACTGTTGTTGGCAGTTTtctaaaaggaaattatttttttatcctccACCCCCAGACCAAGAAGCGGGTGAAGCTGATCACTGAGCATTGCAGGAAAGCCGCTCTCCTCCCcactaaatataaaataaaaaccaagcaaaaaaaaaaacagacaaagtaAAACCCCATTTTCTGCTCTCAAGAGGAGCCTGCTAAGAGAGCTGAATATACAACTACCAAACCATCAGAGAGAAGAGGGAAAATCAGGAAAGAAAAGATCCCAGATCAGGCCACATGACCGCAGAGAAGGGGGGGTGATTGAGCAATGCTTATTTCACTTctcaatccatccatccaatcaatcaatcaatcaatgtatTTCAAGGAGAAATCAGagttaagtaaataaaccagcATGACCTGGAAccacacaaaacagagcagtCAGTCCAACAGCTCAAAGACAAAAACTGCTGTTGGAAGGTTCCTACTTgttattagtttttttacaattcaattttgatttagtatagcgccctttgTAGGGTAGCCACAGATTGAATATACAGTTCATACAGGTAGTATAAACGGTTTTCTGTTGCATTTGATTAAAGAGCGGATAGATATTAGAAAAGACCAGAGGCCCCATTCGGCCTACCATTCTCTTTTGGTCTGTAGTTGCTAATCCATCCCAGATTTTCATCCAGCCTTTTCCTGCAGGAACCCAGAGAGTTGGCTAACTCTACACTGCAGGCAGCTTTTTCAGACCCCTGCAACTCTTTGGGTAAAGTGCTctctctttgttgttgttgctggtaGTTGTTGATTCTCAAGTCAGAACTTGTGCTGTGTTCCTCTGAATTCctccatataaaatatatactaatatacCTATCAGATCTGTAATAGCTTCATTGCATGCAGGcatcttaaatacatttgctgtgGAATCTCCGAAGCAATTTTAGACTGTGTTGCTGGGTGGGGTGTGCGTTCTCGACTGGCGTTGAGAAGGGAGAAACACAGCACTTCCTCAGGATACAAGTCAACCTCCTCCTCCTGTTCTTACATAACCTCTACCTTCTGGCTTGAACAAACAGACcgaagtaaaagaaaacaaaaacaaataaaggagatgatgtggaaaaaaaatataatacactgaTACtatcaaatcaataaacagtACAACTATATTGCTGTGATCACATGAGAAACTAAAGTCCCTGTTGTGATTAGAGTCTGCAACAGTATCCTTTGCAGAATGTGTTAAGGCATCTCTCCCTGTCCTTGAAAGCCCGCATGTCTGACCCACATCGCTTATACATTCCTGTGACAGTGCAGCACTGCAGCGCTCTGCCTGGGTGTCCTGCTGATGAACACCGCGTCCACGGCACACGCTCCCGACAAGGGCACGCGCCTCCATATATGGCAATAAAGATAACAGAATGTGGAAGAGCGTGATGTCAGGTTTCTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18858 True 2914 lncRNA 0.42 1 27802129 27805042

Neighbor

gene id symbol gene type direction distance location
AMCG00016695 NA coding downstream 63700 27732315 ~ 27738429 (-)
AMCG00016694 LOC105013104 coding downstream 94600 27701012 ~ 27707529 (-)
AMCG00016693 LOC107388104 coding downstream 132717 27655748 ~ 27669412 (-)
AMCG00016692 NA coding downstream 151280 27643639 ~ 27650849 (-)
AMCG00016688 nr1d1,LOC102302421 coding downstream 285156 27509645 ~ 27516973 (-)
AMCG00016700 NA coding upstream 1307 27806349 ~ 27809112 (-)
AMCG00016701 tmem101 coding upstream 35153 27840195 ~ 27842668 (-)
AMCG00016709 NA coding upstream 186605 27991647 ~ 27997674 (-)
AMCG00016713 NA coding upstream 287202 28092244 ~ 28107936 (-)
AMCG00016714 NA coding upstream 342785 28147827 ~ 28148678 (-)
G15166 NA non-coding downstream 5121 27796783 ~ 27797008 (-)
G15165 NA non-coding downstream 7149 27794592 ~ 27794980 (-)
G15095 NA non-coding downstream 248967 27550312 ~ 27553162 (-)
G15079 NA non-coding downstream 260289 27535325 ~ 27541840 (-)
G15075 NA non-coding downstream 377308 27424554 ~ 27424821 (-)
G15169 lsm12,LOC107708984,LOC101168777,LOC107562026,LOC107693683 non-coding upstream 5596 27810638 ~ 27815464 (-)
G15200 NA non-coding upstream 78597 27883639 ~ 27884430 (-)
G15201 NA non-coding upstream 80044 27885086 ~ 27886560 (-)
G15207 col1a1,col1a1a,LOC107662397,LOC100286406,LOC106600852 non-coding upstream 159501 27964543 ~ 27966856 (-)
G15206 col1a1,LOC105005744,LOC107585052,LOC107740634,LOC104944135,LOC103393603,LOC108233705,LOC107582926,LOC102798806 non-coding upstream 174504 27979546 ~ 27988429 (-)
G15076 NA other downstream 373478 27424893 ~ 27428651 (-)
G15067 NA other downstream 398207 27401676 ~ 27403922 (-)
G15026 NA other downstream 431990 27369590 ~ 27370139 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other downstream 522795 27265887 ~ 27279334 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other downstream 798422 26995173 ~ 27003707 (-)
AMCG00016712 NA other upstream 324970 28130012 ~ 28157200 (-)
AMCG00016732 NA other upstream 976430 28781472 ~ 28785507 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other upstream 1396830 29201872 ~ 29225587 (-)
G15706 NA other upstream 2396417 30201459 ~ 30202351 (-)
G15787 NA other upstream 2721250 30526292 ~ 30529500 (-)

Expression


Co-expression Network