G15226


Basic Information

Item Value
gene id G15226
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28118543 ~ 28119649 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU18928
CTTAAATCTCTTCACCTTATGTTTGCTTCCATCATCTGCTGTCACCTACGTCACTATGTAAAGGCTTTCTTTACCAAAATATCTTAGCCCCAATATCCAGTTCTAGAATAAGCAGTAACAATGCAAAAATACTAAATAGTGCACTGTGTTATTTATCCGCACCTTTCCAGTCATATTTATCTCCAGTAGGTTACCTGGGGTGGCGGAGGAAGTGCTGTTTCCTTCTCTGCTATGTCTTGTAGTCCAGGAAGTTCAGGAATagattcataaatattttcacaatCCGGTGAGTTTCCAGAATTTACACGAGGACGCCCTTCCGGTTCAGCAGCAGGCGGGGGCTCGCTTTCTGTGGGCCTGCAGGGCGCTGGCTCGTCTTTGACGGCCGGAGTTTCCAGGGTGGGCGGTGGGATCTTCTTTGACGGGACAGGGTCGGCCGGGCTAAAGCTGGGGACCCTGGGTTTCATGAGCTGGTTGTCATCCCCTAGTCCCTTGTTGACCAGCAACACGTTAGGTCCCAGGCTATACCTTTTAAGATGCAATAATCTTGCATCCCGTGTGGACACATCTTTAGCTTCTTCGGGAAGGGGCTTCAGGGTGATGAGTGACTCCGTGGACTCCGTGAACCCCATGCCCAGAAAGCCCTGGTCATGGTGGAGGTCTTGTGGGGTCCCGAACGTCGACATCCGGTACTCATTCTTCCTGTAGTTGGCAGTGGCCCGGGGGCTGATCGTCACTTCTTCCCTTTTCACGGGCAGCACATCCAGTGTCTTTTTTTCAGGCTCGGCCGCAGGGAACAGTCCATTGGGCTCAATAAAGTCCAGCGGTGATGGCAGCACCGAGGGCAGCTCCTTGACGTACTTGGCGGGGATGTAAAAGGGCTTGGTGTGCTCGTCCTTCCGAACGTGCCACCAGTGGTCGTTCGTCTTGGACAGCAGGATGTACCTCTCGTTGGGCTTGATGCACACCTGCCCCCCGTCCCTGCCCGTGTACTCGTACTCGAACTCCACCAGCACCAGCTCCTTCTTGGATGGAGCAGCCATCTCTCTGGACGGGCGACAGTCCTTCTCTGCAGATGGTCAAGATAACAGAGCCTTCCTCCAGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18928 True 1107 lncRNA 0.53 1 28118543 28119649

Neighbor

gene id symbol gene type direction distance location
AMCG00016711 NA coding upstream 28363 28073595 ~ 28090180 (+)
AMCG00016708 LOC106607474,LOC106600853 coding upstream 67512 28040024 ~ 28051031 (+)
AMCG00016710 NA coding upstream 90269 28006284 ~ 28028274 (+)
AMCG00016704 NA coding upstream 230331 27881440 ~ 27888212 (+)
AMCG00016703 NA coding upstream 247357 27862189 ~ 27871186 (+)
AMCG00016720 NA coding downstream 35113 28154762 ~ 28181038 (+)
AMCG00016722 LOC107585102,LOC107694961,LOC107740645,LOC107754315,LOC108230875,LOC107662407,LOC103390188,LOC107374630 coding downstream 160849 28280498 ~ 28286427 (+)
AMCG00016721 NA coding downstream 188953 28308602 ~ 28345826 (+)
AMCG00016728 NA coding downstream 539283 28658932 ~ 28660893 (+)
AMCG00016729 NA coding downstream 545165 28664814 ~ 28681501 (+)
G15224 NA non-coding upstream 1353 28116918 ~ 28117190 (+)
G15025 NA non-coding upstream 748405 27369589 ~ 27370138 (+)
G15005 hoxb7a,hxb7a,hoxb7,hoxb7ab non-coding upstream 835974 27281424 ~ 27282569 (+)
G14992 NA non-coding upstream 844246 27262890 ~ 27274297 (+)
G14803 NA non-coding upstream 1402742 26715569 ~ 26715801 (+)
G15253 NA non-coding downstream 41016 28160665 ~ 28160887 (+)
G15270 NA non-coding downstream 106193 28225842 ~ 28230979 (+)
G15328 NA non-coding downstream 315335 28434984 ~ 28435256 (+)
G15329 NA non-coding downstream 331655 28451304 ~ 28451616 (+)
G15346 NA non-coding downstream 605838 28725487 ~ 28729054 (+)
G15223 NA other upstream 12832 28104737 ~ 28105711 (+)
AMCG00016707 col1a1,LOC100135784,LOC100286406,LOC106600852,LOC105005744 other upstream 119766 27964578 ~ 27998777 (+)
AMCG00016702 NA other upstream 239846 27872663 ~ 27878697 (+)
AMCG00016706 LOC102299446 other upstream 279440 27836513 ~ 27839103 (+)
AMCG00016705 NA other upstream 285006 27829268 ~ 27833537 (+)
AMCG00016731 NA other downstream 623711 28743360 ~ 28761192 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other downstream 1114855 29234504 ~ 29256824 (+)
AMCG00016769 NA other downstream 1902958 30022607 ~ 30107727 (+)
AMCG00016772 g6pc other downstream 1953289 30072938 ~ 30083528 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other downstream 1989950 30109599 ~ 30113284 (+)

Expression


Co-expression Network