G15328


Basic Information

Item Value
gene id G15328
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28434984 ~ 28435256 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU19065
CTCTTTTTAAGTTAATCCACAGAGAActacattaaatacacattcgGGTACGCAGCGTGCACCATGATTAatagcaaaaagaaaacaactctGAAAACCGGGGGTAAATTCGGCCCATTATCCAAATTACCGACCACAATTATCTTATGTACAAGAAAGTTAGCTAATGTACTAATAAGCTCAGGCCTGGTTAAAAGCATCAGTGTTTATAAGTCAGATAGATGAATGGAAAAGTCCCAGGGTAATTCAGAAATAGGTTCAGCTACCTTACAG

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19065 True 273 lncRNA 0.66 1 28434984 28435256

Neighbor

gene id symbol gene type direction distance location
AMCG00016721 NA coding upstream 89158 28308602 ~ 28345826 (+)
AMCG00016722 LOC107585102,LOC107694961,LOC107740645,LOC107754315,LOC108230875,LOC107662407,LOC103390188,LOC107374630 coding upstream 148557 28280498 ~ 28286427 (+)
AMCG00016720 NA coding upstream 253946 28154762 ~ 28181038 (+)
AMCG00016711 NA coding upstream 344804 28073595 ~ 28090180 (+)
AMCG00016708 LOC106607474,LOC106600853 coding upstream 383953 28040024 ~ 28051031 (+)
AMCG00016728 NA coding downstream 223676 28658932 ~ 28660893 (+)
AMCG00016729 NA coding downstream 229558 28664814 ~ 28681501 (+)
AMCG00016730 NA coding downstream 247115 28682371 ~ 28718666 (+)
AMCG00016734 myst2,LOC107689642,LOC107554133,LOC106607195 coding downstream 326768 28762024 ~ 28777025 (+)
AMCG00016735 dlx4b,LOC105899934,LOC106600935,LOC106583890,LOC105028424 coding downstream 482860 28918116 ~ 28929190 (+)
G15270 NA non-coding upstream 204005 28225842 ~ 28230979 (+)
G15253 NA non-coding upstream 274097 28160665 ~ 28160887 (+)
G15226 NA non-coding upstream 315335 28118543 ~ 28119649 (+)
G15224 NA non-coding upstream 317794 28116918 ~ 28117190 (+)
G15025 NA non-coding upstream 1064846 27369589 ~ 27370138 (+)
G15329 NA non-coding downstream 16048 28451304 ~ 28451616 (+)
G15346 NA non-coding downstream 290231 28725487 ~ 28729054 (+)
G15417 NA non-coding downstream 529088 28964344 ~ 29039663 (+)
G15422 thrab,LOC108430158,LOC106579329,LOC107665883 non-coding downstream 608461 29043717 ~ 29043973 (+)
G15424 NA non-coding downstream 622430 29057686 ~ 29058167 (+)
G15223 NA other upstream 329273 28104737 ~ 28105711 (+)
AMCG00016707 col1a1,LOC100135784,LOC100286406,LOC106600852,LOC105005744 other upstream 436207 27964578 ~ 27998777 (+)
AMCG00016702 NA other upstream 556287 27872663 ~ 27878697 (+)
AMCG00016706 LOC102299446 other upstream 595881 27836513 ~ 27839103 (+)
AMCG00016705 NA other upstream 601447 27829268 ~ 27833537 (+)
AMCG00016731 NA other downstream 308104 28743360 ~ 28761192 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other downstream 799248 29234504 ~ 29256824 (+)
AMCG00016769 NA other downstream 1587351 30022607 ~ 30107727 (+)
AMCG00016772 g6pc other downstream 1637682 30072938 ~ 30083528 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other downstream 1674343 30109599 ~ 30113284 (+)

Expression


Co-expression Network