G15329


Basic Information

Item Value
gene id G15329
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28451304 ~ 28451616 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU19066
AAGTGACCAAGGCATGGATAAGGGTTTCAGTGCTGGAGTGTGACAATGAAGGACGAAGCCTGGAGATGTTGCAGAGGTGGAAAAAAGATGTCCAGGTAATGGCTTTTATATGGGGTTCAAATGAAAGCATGCTGTCCAAGATGACACCAAGGCTTTTGACTTGTGATGAAAGCGGAACTGAAAAACCATCAATGTTAATACTAAGGTTGTGCTGTTTAGAAAGAATAGATTTAGAGCCAATAAGCATGACTTCTGTCTTGTTGCTGTTAAATCTGAGGAGGTTCGAGCTCATCCAGCTCCTAATATCTTGGAG

Function

GO:

id name namespace
GO:0008454 alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity molecular_function
GO:0140103 catalytic activity, acting on a glycoprotein molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19066 True 313 lncRNA 0.42 1 28451304 28451616

Neighbor

gene id symbol gene type direction distance location
AMCG00016721 NA coding upstream 105478 28308602 ~ 28345826 (+)
AMCG00016722 LOC107585102,LOC107694961,LOC107740645,LOC107754315,LOC108230875,LOC107662407,LOC103390188,LOC107374630 coding upstream 164877 28280498 ~ 28286427 (+)
AMCG00016720 NA coding upstream 270266 28154762 ~ 28181038 (+)
AMCG00016711 NA coding upstream 361124 28073595 ~ 28090180 (+)
AMCG00016708 LOC106607474,LOC106600853 coding upstream 400273 28040024 ~ 28051031 (+)
AMCG00016728 NA coding downstream 207316 28658932 ~ 28660893 (+)
AMCG00016729 NA coding downstream 213198 28664814 ~ 28681501 (+)
AMCG00016730 NA coding downstream 230755 28682371 ~ 28718666 (+)
AMCG00016734 myst2,LOC107689642,LOC107554133,LOC106607195 coding downstream 310408 28762024 ~ 28777025 (+)
AMCG00016735 dlx4b,LOC105899934,LOC106600935,LOC106583890,LOC105028424 coding downstream 466500 28918116 ~ 28929190 (+)
G15328 NA non-coding upstream 16048 28434984 ~ 28435256 (+)
G15270 NA non-coding upstream 220325 28225842 ~ 28230979 (+)
G15253 NA non-coding upstream 290417 28160665 ~ 28160887 (+)
G15226 NA non-coding upstream 331655 28118543 ~ 28119649 (+)
G15224 NA non-coding upstream 334114 28116918 ~ 28117190 (+)
G15346 NA non-coding downstream 273871 28725487 ~ 28729054 (+)
G15417 NA non-coding downstream 512728 28964344 ~ 29039663 (+)
G15422 thrab,LOC108430158,LOC106579329,LOC107665883 non-coding downstream 592101 29043717 ~ 29043973 (+)
G15424 NA non-coding downstream 606070 29057686 ~ 29058167 (+)
G15425 NA non-coding downstream 614501 29066117 ~ 29066407 (+)
G15223 NA other upstream 345593 28104737 ~ 28105711 (+)
AMCG00016707 col1a1,LOC100135784,LOC100286406,LOC106600852,LOC105005744 other upstream 452527 27964578 ~ 27998777 (+)
AMCG00016702 NA other upstream 572607 27872663 ~ 27878697 (+)
AMCG00016706 LOC102299446 other upstream 612201 27836513 ~ 27839103 (+)
AMCG00016705 NA other upstream 617767 27829268 ~ 27833537 (+)
AMCG00016731 NA other downstream 291744 28743360 ~ 28761192 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other downstream 782888 29234504 ~ 29256824 (+)
AMCG00016769 NA other downstream 1570991 30022607 ~ 30107727 (+)
AMCG00016772 g6pc other downstream 1621322 30072938 ~ 30083528 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other downstream 1657983 30109599 ~ 30113284 (+)

Expression


Co-expression Network