G15346


Basic Information

Item Value
gene id G15346
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28725487 ~ 28729054 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU19084
CTTTTTGcaaaaaatcacacacacacacacacttcacaatgaaaaaattacacattaagtactgGGTTTATTCTTTACTGCTTACATTCCGGTAATGTACAGAAAAGGtatgggaacattaaaaaaaaaaaaaaaaaagtatacaattTAAACACAAGCCCtgacacttaaaacaaaaaatacaattgcctTCACTAACAGCCTGTACCCCTCCTGTCAGAAACTAATATTGTTCACATTTGACATTGATTAAAACCTGTTTCCACCCCTCTAAAACACACTGCAATATTACAGCAGAAACTTGTATCCCTTTTAAAGAGGTTGGAAACTGAAATAGAAGAATGACATGAGATAGGAATGACTGTTAATCCACAGGGGTAATTTAAGACTGTTCACTGCCACGTCAAGTGGGCCCAGAGTAGGTGTCACAGTGGGTATGGTTCTACAACTACACCACTGCCGGAGAACACCGCTGCAATGGTCTGGTCATTTTTCACTGGGTTCAAAGGTGTTGATCTCTGAATTTTATCAAAGCCTGCCAACTTACCTTCCAAATGTACTAAAGGCCTCTGTTTAACGCAAAAAGAACCCATGCTGCCGTTCACCAGTGTGAACCCGTTGTGCTTATTAAGGAGCAGCAGGAGTGAAGTGTTTAATAGAGTTAAGTGAAGGTTTAATAGACCAATGCACGGCCTTAGAAAGTCATTCCAGGTTTACTGATCCTGTGGCTCTCTCTTCCAGGGTGCTTCACTTGCAGGGATGCACATTTTAAGCCACCAGTAGAAATGATTACATGCATTTATGGGTGGAAAGGGAAGGGGGGCAGTATTGGAAGATTATTCCACAAAATTATGTATGTTGTGCCTTCAGAATAGGATCTCGCGAGTCCCATTTTCTTTTCCCTGACACCATGGCCGGTGGGTCGAGAAGAGGTTGGTGCCGCCTCCTGTATGTTAGCAAGGCGCACCACCATGTGCGTTTCAGGTTTACAGTGCTCTTGTGGTGTTTGATTATACATCCAGCCACAGAGATTCGACAGGCTGGAGTCTGTACTCGCATTGAACGAAAACCTACAGTCCTACCTCAGTAGGGCACGGATCGGCACTATCCAGCAGATGTCCACATTAAAGCACAAGAAAACACATGACAAATATCCGAGACGGATTAGCCCTCTAGTCTCTAAGGGATGCGGTAGCTGCATTCCCGGATTAATACATCAAGTTGAGGAGTTCAAAGGTGTGGATGAGGGGTGGTGCTCGATGGTATGAGTTCTCCCTAAGCTTCCGATCCACTGTACAGAATTGGACTGCAGATTGTATGTGCCGAGCTAGAACCGAGTGCAATACGGACAACTGCACCGGATGACAACAAAGGCACGTTATTTTTCTGGTGCTAAGGCTAAACATTTAAACGAAAAGAGCTTCTGGAGATCTGAGATCCGCGGGTCATTTTGGGGTTTTTTGGTTTGGGATTCGGCACCCAGGACACTGTCCGATCCAAACCGTTTAAAAACCATAAGGTCAAAAGATCCACTGTCAGCAGTAGGATTCTATATAGGGGTCTGATGCCAGTGTACTGGCTGTTTGGAATGGGTTGTACTGTGATCGCAAAAGGAAATACAGATTTTGATTAGACTGATTGGTTGGCTAATTGTTATACAATTGGATGGGGGAGCTGCCCTGCCCAGAGCAGCATGTGCAGGGGGGGACTGGGTGGCCAAAACAGGTGTTTGCTTCCTGGGGTCAATCACATTTTATTGGTCAGTGATTGACTAATTTGCTCTTGCCTCATTGGCAATTAAATGCAGATTCATAGAAAAATCCCCCCCCCGGGAGTTTTGCAAGGGGCGGGCACGGTGACAAGTACTGTCCATACCAGCCTCACACCCATTGTTGGGCCTTTTTAAACGATTTGGACCTCTGGggctgatgctgctgctgcattttCACCATCTAGTTCAGGTGGCTGTGTCCTCTGGGCAGAGGGCCGGGGCCGGACAGCACCTCACTGTCCCTGTAGCTCTCGCTCCCGGTTGAGATTCTGGAAGAAGGCCTTTCCAAACTCATAGGTGCTGATCATCACAGCACACGCTGGGGCCACTTTGATCACCCGTGGCAAAAAAACCTGCAAAGAGTCCACGATAGCCAGCTTCTGCCCAGATCCTTCTCATGATCATTAAGGTGGAGGAGGGCTTCTTTGCAACAACTAGGaagtggaaaaaagaaaaagaaaaagacagggggaggggaagaacagaacaaaaatattttttagtttccTTCGTGGACCCTGGAAGTATATAtttgagagagtgagagagagagagagagaggaggcagtCTGAGGGGCAAGTTCATTTTGTCTTCTCGTGATAgttccttctttttttatttcccgCACTCTATGCAGACTCTGCAAAGGTAGAGACGAAGATTGACAGagttaatagtttaattaatgacACCCATGTGACCTATCTCAGCATTCCCACCCCCaactcaccccccccccaattaaAAAACCTCCGTCAGGAGTGAGGTCAGTGTGAGAATCATTGTCCAAATTGCAGTCATCAATCTTGGGCACCGATCTCCGCTCCGAGCAAAAAGACAGGTGAGGAATTATTGCACAGAAGCTTAGAGACGAGAATCCAGAGGTTCCCAAAGACGAGacgcaaacaaacaaaacaaaaaagagcagATTTTCTTGCACAACCAAGTCCAGCAAATGCCAGGGAGAAGAGTCTACTGCTGAAGTCAGGCGTTGCCCCACAGCAGAATGCCATATAGTGCCGGGTGCTAGTTAGTAAAGGCGCCACGAGAAAATGAAGGCTCAAGTTGCCAGTTGTCTTGTCCTGCTGTTCACCTTTCTGGTGCCAGGGAGACACTCAACCTGAGAGGAGGGGGGAAATTACACCTTGAGggcaccccccccccatccaGAACACACACCACCCAGGGTAGCCCCAGCCCGACAGCATCCTGTTTCCAAAAAAGGGGATAAAacgaggagagagagggatttaAACACGGTGTTGTTGTAGTAGGGTCCCTTTTTGCGTACGTTCACAAAGCAGAACAgcctctgccccccccaccccacctcttACCTGCCAACGTCTCCATCTCGCCCAGCTCGATCTGCCTCCGGGTCTTCACCACGTCGAACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19084 True 3169 lncRNA 0.47 2 28725487 28729054

Neighbor

gene id symbol gene type direction distance location
AMCG00016730 NA coding upstream 6821 28682371 ~ 28718666 (+)
AMCG00016729 NA coding upstream 43986 28664814 ~ 28681501 (+)
AMCG00016728 NA coding upstream 64594 28658932 ~ 28660893 (+)
AMCG00016721 NA coding upstream 379661 28308602 ~ 28345826 (+)
AMCG00016722 LOC107585102,LOC107694961,LOC107740645,LOC107754315,LOC108230875,LOC107662407,LOC103390188,LOC107374630 coding upstream 439060 28280498 ~ 28286427 (+)
AMCG00016734 myst2,LOC107689642,LOC107554133,LOC106607195 coding downstream 32970 28762024 ~ 28777025 (+)
AMCG00016735 dlx4b,LOC105899934,LOC106600935,LOC106583890,LOC105028424 coding downstream 189062 28918116 ~ 28929190 (+)
AMCG00016737 NA coding downstream 270607 28999661 ~ 29014142 (+)
AMCG00016745 cdk5r1,LOC108426451 coding downstream 599475 29328529 ~ 29329440 (+)
AMCG00016746 NA coding downstream 640704 29369758 ~ 29371719 (+)
G15329 NA non-coding upstream 273871 28451304 ~ 28451616 (+)
G15328 NA non-coding upstream 290231 28434984 ~ 28435256 (+)
G15270 NA non-coding upstream 494508 28225842 ~ 28230979 (+)
G15253 NA non-coding upstream 564600 28160665 ~ 28160887 (+)
G15226 NA non-coding upstream 605838 28118543 ~ 28119649 (+)
G15417 NA non-coding downstream 235290 28964344 ~ 29039663 (+)
G15422 thrab,LOC108430158,LOC106579329,LOC107665883 non-coding downstream 314663 29043717 ~ 29043973 (+)
G15424 NA non-coding downstream 328632 29057686 ~ 29058167 (+)
G15425 NA non-coding downstream 337063 29066117 ~ 29066407 (+)
G15450 NA non-coding downstream 415628 29144682 ~ 29179798 (+)
G15223 NA other upstream 619776 28104737 ~ 28105711 (+)
AMCG00016707 col1a1,LOC100135784,LOC100286406,LOC106600852,LOC105005744 other upstream 726710 27964578 ~ 27998777 (+)
AMCG00016702 NA other upstream 846790 27872663 ~ 27878697 (+)
AMCG00016706 LOC102299446 other upstream 886384 27836513 ~ 27839103 (+)
AMCG00016705 NA other upstream 891950 27829268 ~ 27833537 (+)
AMCG00016731 NA other downstream 14306 28743360 ~ 28761192 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other downstream 505450 29234504 ~ 29256824 (+)
AMCG00016769 NA other downstream 1293553 30022607 ~ 30107727 (+)
AMCG00016772 g6pc other downstream 1343884 30072938 ~ 30083528 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other downstream 1380545 30109599 ~ 30113284 (+)

Expression


Co-expression Network