XLOC_006165


Basic Information

Item Value
gene id XLOC_006165
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 38226076 ~ 38284199 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013657
AACATGAATACATAtaagtataaacacacacaccccCTTATCCAAAAGACAATGGATAAGTCGGCTTTCTGGTGCGCTCCAGAGCGAACTCGACACCAATTAAGTCAGGCCGCAGGCGCTCTGTGAGACGGGCTGGTGAAATCAACCAGGTAGACCGACGAAACAGACACACGGACACCAAACAgcagCGTGCGTTATGGGTGGGGATGGCGAATGTGATGGTGGACGTGTGCACCTGCATCGCCTCAGGCTTTTATAGATTACTTGGTGTCTTCCACAACACTGAATCCCAAGCATATTCAGCCACTCTCTCAAAACTGACCTCCAAACAGCCACATCTGCTGCCGCCATATGCCCGTTCAAGGGACCGCTTCAGCCTCTCATGAGAAACACTGATACTTTCAGAGTCATCTGGTCTCCAAGCTGTACGGCGAGGACAGCTTCTGCTAAGATATTTGCATAGACCATGCTGGAGGTCTGGGGCAGCCGAGGGCCCAGTGGTTGGTAGAGTGTTCAAAGGAAAAGGACGAAAGACCCAGAGGATTCATGTGGAGCTGGAGCATTGTCTCTGAAAAACAGGAGCACTGCCGGGGAAGAAATGCCTTGATTTAAAATTCGCTTACAAATCCAGCTATGGCTCGAGCGAACACCACAAGTGTGCAGAATGAGAAGCAGAGGGGGTGAATAAAATGAAACCTGCTCTCACAATCTCATTTAAGGGACTGCAATGCCTCAGGTGTGAGGGTATGAAGCGGAACAGAGACGCCACACGCCAGAATCGCTCGTAGGCACCATGGCATCTTGACAGAGGAAATTAAGCTGCATCAGTGCTGGCCTAATGCTAGAGCCTGAAGACAAACATGTAAATGTCAGCTCTTTAATAGACATGTGAAATAGATCctgtcatttctttttttttgggggggtgtaGAATCCAAGAAAGGTTGAATGGAAAGATTGCTACGAATCCgtaacacattcacacatatgaTGTTGATGTGCTTTGGTGTGAAAAAAGTGTGTCAGTCTTAAGGAAAACATGCTAAGAATTGGTCATGCATGTTTTTACATGATGGAAATAATTATgtgtaaaaaatgaaaatgagcaATGCGACAGTATGCTATGAAGCATAATTGCTTCAGTACATTTCCTCCTTTTATAAGACATATATAATTGCAGTTATGTTTCATAAAATGGCCTCACCAATTAACCTCTTCATAAGGGTCTCATTATATGTGATTTTCATCCTAGAATTTATCATGGATGTGCGCGAGTCATATCCTGTCTAACCAAGCTTACATTAAATTACACTTCCACTCCTGAGAGAGCCAATAAAATTTCCAATAACATTTCAAAGCATGCAATAATATTCCAAAACAAGAtgcaaaacaccaaaacaaagcTTGATTAGCACTTTCAGAGTCGTCTAAACACTAATTGGCACAGTAAGATTCATCCACGTGACGCAAAGGCAACCATCTGCCAGAACATTACAAGTCATGATGTTTCATCCACAGCCAGAGGAAACCGTTGTGTCGATGCTCAGCAGCTTCCACGCTGGGCCTCCAAAATATGGAGCAGTAATTTTGTGGAAGAGGGCAAACAGTCacactaatgttttatttttttttgtgtcttaTACTAAATTTCGAAACAAACCTGTCAGGCTTCGCTTCATTCTCTGCCTGAGCTCCCCACAGTTCTTCTTTTGTCATGAAGCAGACATTTCTCCAAAGTTTTGTTGGCAGCATCCCACACTGTGTAATTGATTATGTAGATCTATTCATTTCTCAAAGCATGTGAGGGATTCACCAATTAATTCCACCGCTCTGAATAATAGCTGCTGGTTCATCTCGGGGAAAGCAGTGGGCTGAAACAATAACGTTGGCAAATAAGAAACGAAGTAATAAGAAGTTGGACTTTAGGGGGAAAACTCACACGTCATTGGAAAATACCAAGTCTTGCTTCGGGGGGAg
>TCONS_00013658
AACATGAATACATAtaagtataaacacacacaccccCTTATCCAAAAGACAATGGATAAGTCGGCTTTCTGGTGCGCTCCAGAGCGAACTCGACACCAATTAAGTCAGGCCGCAGGCGCTCTGTGAGACGGGCTGGTGAAATCAACCAGGTAGACCGACGAAACAGACACACGGACACCAAACAgcagCGTGCGTTATGGGTGGGGATGGCGAATGTGATGGTGGACGTGTGCACCTGCATCGCCTCAGGCTTTTATAGATTACTTGGTTGTCAGCAGTCCAACCACACCTCCAAACCCCCAAATGATTTTGGCAGCTGGAGCAACGCACGAACGCCACAGCCCGAACATTTGAGTGTCTTCCACAACACTGAATCCCAAGCATATTCAGCCACTCTCTCAAAACTGACCTCCAAACAGCCACATCTGCTGCCGCCATATGCCCGTTCAAGGGACCGCTTCAGCCTCTCATGAGAAACACTGATACTTTCAGAGTCATCTGGTCTCCAAGCTGTACGGCGAGGACAGCTTCTGCTAAGATATTTGCATAGACCATGCTGGAGGTCTGGGGCAGCCGAGGGCCCAGTGGTTGGTAGAGTGTTCAAAGGAAAAGGACGAAAGACCCAGAGGATTCATGTGGAGCTGGAGCATTGTCTCTGAAAAACAGGAGCACTGCCGGGGAAGAAATGCCTTGATTTAAAATTCGCTTACAAATCCAGCTATGGCTCGAGCGAACACCACAAGTGTGCAGAATGAGAAGCAGAGGGGGTGAATAAAATGAAACCTGCTCTCACAATCTCATTTAAGACTCCTTTTCTGAGTTTCCTTTCATCTCAATTTCTC
>TCONS_00012137
GAGCGAACTCGACACCAATTAAGTCAGGCCGCAGGCGCTCTGTGAGACGGGCTGGTGAAATCAACCAGGTAGACCGACGAAACAGACACACGGACACCAAACAgcagTTGTCAGCAGTCCAACCACACCTCCAAACCCCCAAATGATTTTGGCAGCTGGAGCAACGCACGAACGCCACAGCCCGAACATTTGAGTGTCTTCCACAACACTGAATCCCAAGCATATTCAGCCACTCTCTCAAAACTGACCTCCAAACAGCCACATCTGCTGCCGCCATATGCCCGTTCAAGGGACCGCTTCAGCCTCTCATGAGAAACACTGATACTTTCAGAGTCATCTGGTCTCCAAGCTGTACGGCGAGGACAGCTTCTGCTAAGATATTTGCATAGACCATGCTGGAGGTCTGGGGCAGCCGAGGGCCCAGTGGTTGGTAGAGTGTTCAAAGGAAAAGGACGAAAGACCCAGAGGATTCATGTGGAGCTGGAGCATTGTCTCTGAAAAACAGGAGCACTGCCGGGGAAGAAATGCCTTGATTTAAAATTCGCTTACAAATCCAGCTATGGCTCGAGCGAACACCACAAGTGTGCAGAATGAGAAGCAGAGGGGGTGAATAAAATGAAACCTGCTCTCA
>TCONS_00012138
GGGCTGGTGAAATCAACCAGGTAGACCGACGAAACAGACACACGGACACCAAACAgcagCGTGCGTTATGGGTGGGGATGGCGAATGTGATGGTGGACGTGTGCACCTGCATCGCCTCAGGCTTTTATAGATTACTTGGTTGTCAGCAGTCCAACCACACCTCCAAACCCCCAAATGATTTTGGCAGCTGGAGCAACGCACGAACGCCACAGCCCGAACATTTGAGTGTCTTCCACAACACTGAATCCCAAGCATATTCAGCC
>TCONS_00012139
caggtaaatattaaataacagccGTAAACACTTAGACGCAgacaaacaagaaacaaaaaacattCAGACAACATGTATATGTTAATAGCGTGCGTTATGGGTGGGGATGGCGAATGTGATGGTGGACGTGTGCACCTGCATCGCCTCAGGCTTTTATAGATTACTTGGTTGTCAGCAGTCCAACCACACCTCCAAACCCCCAAATGATTTTGGCAGCTGGAGCAACGCACGAACGCCACAGCCCGAACATTTGAGTGTCTTCCACAACACTGAATCCCAAGCATATTCAGCCACTCTCTCAAAACTGACCTCCAAACAGCCACATCTGCTGCCGCCATATGCCCGTTCAAGGGACCGCTTCAGCCTCTCATGAGAAACACTGATACTTTCAGAGTCATCTGGTCTCCAAGCTGTACGGCGAGGACAGCTTCTGCTAAGATATTTGCATAGACCATGCTGGAGGTCTGGGGCAGCCGAGGGCCCAGTGGTTGGTAGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-090313-388 No description available

Ensembl:

ensembl_id ENSDARG00000091950

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013657 False 1977 lncRNA 0.44 4 38226076 38283726
TCONS_00013658 False 842 lncRNA 0.50 5 38226076 38284199
TCONS_00012137 False 631 processed_transcript 0.51 3 38226157 38277981
TCONS_00012138 False 263 mRNA 0.53 4 38226205 38277581
TCONS_00012139 True 496 mRNA 0.49 3 38226261 38277785

Neighbor

gene id symbol gene type direction distance location
XLOC_006164 zgc:171579 coding upstream 3362 38213694 ~ 38222714 (+)
XLOC_006163 BX322660.1 coding upstream 75439 38150517 ~ 38150637 (+)
XLOC_006162 BX005106.1 coding upstream 551782 37674178 ~ 37674294 (+)
XLOC_006161 phf3 coding upstream 552500 37653851 ~ 37673576 (+)
XLOC_006160 NA coding upstream 681755 37538653 ~ 37544321 (+)
XLOC_006166 adgrb3 coding downstream 18466 38302665 ~ 38305148 (+)
XLOC_006167 adgrb3 coding downstream 146267 38430466 ~ 38593701 (+)
XLOC_006168 col19a1 coding downstream 530322 38814521 ~ 38856156 (+)
XLOC_006169 col19a1 coding downstream 706740 38990939 ~ 39115963 (+)
XLOC_006170 fam135a coding downstream 897900 39182099 ~ 39228382 (+)
XLOC_006149 NA non-coding upstream 2230909 35989155 ~ 35995167 (+)
XLOC_006140 CU681845.1 non-coding upstream 2703900 35483618 ~ 35522176 (+)
XLOC_006175 NA non-coding downstream 1400272 39684471 ~ 39727464 (+)
XLOC_006176 NA non-coding downstream 1561065 39845264 ~ 39873628 (+)
XLOC_006177 BX005216.1 non-coding downstream 1685150 39969349 ~ 39969465 (+)
XLOC_006179 NA non-coding downstream 2043361 40327560 ~ 40330374 (+)
XLOC_006181 NA non-coding downstream 2075961 40360160 ~ 40419304 (+)

Expression


Co-expression Network