G15457


Basic Information

Item Value
gene id G15457
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 29199721 ~ 29201766 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU19214
CCTATATCCACAGTGTCCCCATGGCACAGCAGAGATTCCAGCTTCACCCCAGTGGGTTGAAACTTGCTCTTTTTAAAGATGACCCACTTGGGGCACACAGTCTTTTTCAAGAGATACAGCAGGTCGAGGTTGTGGTTCTCGTAGATACTCCAGGCTGGCTGTAGTTCCCCCTGAGTGTCCAGCTCTTTCACAATGCTCGTGGTCAGCCTCTTAAACATGGTCCGTGTTTTATACTTCTCAGTCCCTTGGCGGGCATCTACAGTTGTAAGTAAATATTACCGTGTACAGACCTTACAATACatggtttttaaaaacaaataaacaaacaaacaacagacaaCAGCTGCCCCCTGGCTTCCTTTGCTACTATAATAAGTGGTTTCCGTTAGAGGTATCCTACTTTATTCttcccacacacaaaaaagtctGTCAGGGTACAACACATTTTTTACCCCACGATAGTCAGCTTATATATCATGATTGCAAGTGATCGATCTTGGCATAGCTGGCGAGAAAGAAGGAGAGGCTTGCTTTCCTGCCCCTTGGACTGGCATGGTGCAGCAGCCACGTTTATTCCCCCTTTCTGTGTACTTACTGACACCAGGTGGCAAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19214 True 612 lncRNA 0.46 2 29199721 29201766

Neighbor

gene id symbol gene type direction distance location
AMCG00016737 NA coding upstream 185579 28999661 ~ 29014142 (+)
AMCG00016735 dlx4b,LOC105899934,LOC106600935,LOC106583890,LOC105028424 coding upstream 270531 28918116 ~ 28929190 (+)
AMCG00016734 myst2,LOC107689642,LOC107554133,LOC106607195 coding upstream 422696 28762024 ~ 28777025 (+)
AMCG00016730 NA coding upstream 481055 28682371 ~ 28718666 (+)
AMCG00016729 NA coding upstream 518220 28664814 ~ 28681501 (+)
AMCG00016745 cdk5r1,LOC108426451 coding downstream 126763 29328529 ~ 29329440 (+)
AMCG00016746 NA coding downstream 167992 29369758 ~ 29371719 (+)
AMCG00016747 NA coding downstream 204349 29406115 ~ 29424802 (+)
AMCG00016759 NA coding downstream 456310 29658076 ~ 29662545 (+)
AMCG00016754 NA coding downstream 460913 29662679 ~ 29670116 (+)
G15450 NA non-coding upstream 19923 29144682 ~ 29179798 (+)
G15425 NA non-coding upstream 133314 29066117 ~ 29066407 (+)
G15424 NA non-coding upstream 141554 29057686 ~ 29058167 (+)
G15422 thrab,LOC108430158,LOC106579329,LOC107665883 non-coding upstream 155748 29043717 ~ 29043973 (+)
G15417 NA non-coding upstream 160058 28964344 ~ 29039663 (+)
G15460 NA non-coding downstream 9731 29211497 ~ 29211718 (+)
G15461 NA non-coding downstream 11464 29213230 ~ 29213607 (+)
G15475 NA non-coding downstream 31984 29233750 ~ 29313708 (+)
G15505 rara,LOC106578316,LOC108434941,LOC107571738 non-coding downstream 224134 29425900 ~ 29426617 (+)
G15591 NA non-coding downstream 689150 29890916 ~ 29893494 (+)
AMCG00016731 NA other upstream 438529 28743360 ~ 28761192 (+)
G15223 NA other upstream 1094010 28104737 ~ 28105711 (+)
AMCG00016707 col1a1,LOC100135784,LOC100286406,LOC106600852,LOC105005744 other upstream 1200944 27964578 ~ 27998777 (+)
AMCG00016702 NA other upstream 1321024 27872663 ~ 27878697 (+)
AMCG00016706 LOC102299446 other upstream 1360618 27836513 ~ 27839103 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other downstream 32738 29234504 ~ 29256824 (+)
AMCG00016769 NA other downstream 820841 30022607 ~ 30107727 (+)
AMCG00016772 g6pc other downstream 871172 30072938 ~ 30083528 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other downstream 907833 30109599 ~ 30113284 (+)
G15659 NA other downstream 1034688 30236454 ~ 30236841 (+)

Expression


Co-expression Network