G15651


Basic Information

Item Value
gene id G15651
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30213172 ~ 30215710 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU19445
TCGGCAACGCATTGCATGGGAAGCCAGGAAAACCACtggagtattttttatttttgatcttattttgttgtatttgtttcccaCAGCCAAAGAGATAAAAATGGCTGAAGCCATAAGCTGGACCTGCAGTCATGTAATATGAAGTGACTTCTTCCGAAGAGTTGCTCTGACTCTGAAACTAGCAAATCAGCAAGAAAGCTTTCTTGACTCGAACCAactttgtgaaaatgtttgctTGCTGTAAATTGGATTCATTTTGGGTGTTACTGACTTCTCCCGATTTTGTGCAGCTAAATCTGTCACTCTGCCGTCACTGCGGATTCATTTCGGATTCATTTGTCGGTTTTCTGCttcaactgattttttttttttttaaaggcaattGTTTTTAGGCGTCCGTACATTATTCAGGACTTCAACCGTGAATTAACAGTTTTGTAATTTCtagaattattatgattatttttttaaataacttatgAAAGAATGAGATTGTCTTGCACACAGCAGACCCCCcatgagtgtgcatgtgtgtgtgtggtgggggggccTCCCTCCAGTTTCATGCCAGGGTAGAGCAGAGTTGGAAGGTGTGCTGGAGAGGTCAGGCAGGCGATGTGAAAGCTGTGTTCATCAACAGGTAAGGCTTAAGGAAGTAACGGACCAGACACAGGTATACAGTTAATTGCAAATGAGAGAAAATCAGATTTAATTTCctgaacaaatatttatttttcccagatTGTGTTCTCATATTACAGTACTTTATCAGCTCAATAAAAatatagagcatttaaaaaaaaaattaaagcatttatttatttccaataggAGGTCTGAAGGATAAGAAGATTTATATAGCAACCGAATTCTAAACATATGTAAAACCGATATCAAGCATAGTTTTTCCCCTGGTACATTTTATATCGTCTAACAGACGTACCAACCTGTTGCATCAATGGTCAAGCTCTCAGTCATTgttcaacattttaaagaattgcACTGAACTCTACATAAAACTGCTGCTTTTGTAGCGTGTAACAATGATATGATTGTAGTATACTgcaataattttgttttcttcaaaaccaccgtgtgtgtgtgtgtgtggggggggaggggggaggagtACGGGGTAACATTAGTTTCCCTCTCTGTAATCTATCTCAGTGTAAATAGGGTTGCTGTTAACTACCCTGTAAAGTTTTAGGGTTTGTAGTTCCtgttaaatgaaatattaaaaaaaaaaaaaaaccttaactCACAACaagcaaatgaaagaaatgaacTGCGCATGTATATTTTATCAAAACccgtgtattttttttttttgtttctgtattgtaaAAAATTGAAAGTTGACCATTTTTGCAAATGAGGTGTATCCAGTAAACAGTGAACTAtggtgatttttgtttattttattcggTGCGTTGGGAAATAAAGTGCAGTGAGATCTGCAGGTCTGTTTTACTCCTCTGCTCTTAGTTGTTAGTTTCCAAAGCCATGTGCCTTCTTTACCACACCTGTAGATGGAAATCCAAGCAATCCTCCCACAGTGCAGTGTCCCTCACCCACAGGCTTGGTAGGAGCCGAAGGACAAGAAAAGAACAAGTGGGCCTCAACATTTTGACTTTAGTCCTCTTGCCTGTAGTGTTCAGACCTGTTCTTTCCTTCTCAACACAAAAGAGGGTACATGTCCATGCATGGTGATTTCATGGTGTCACATTGTTAGTGCGGATTTAGAGGGGTCCATTTAAATTGGGATGCAAGTCCAATAGTATTGAATTTAATCAATGTTCAGGGGGATAAATGACTGAAGCAGGGTTTAGTTAGATTGTGATGCCAGAATGAGATCCTGAACCCAGCCAAGCatcaggaaatgttttaaatatgctgCTGTATTGTTTGCAAATATATCTTTTACTATTTATTGATATcattaaacagaaaagagaTGTGGGTGTGTTTTATTAGTCCTATGTGTTGCAAGCAGTTGCTATAAAATCTAAaagggaatatatataaaatacattaaaaaagtccCAGATTTGTAAGGGCCTGTACCAGCTGAAGAAGCTGATCATAAGCATTGTGTGAAGACGATGCAGTGTTGCTTAAACCACCAGGGGGCAGCAGTGAAGTACGTGCTCAGGAAGGGTTGAGCTGCTAATCCTGGGAGCTCAAAGGACAGCTGGTTAAACCTCACTTTGTTCTGTATATCTGCTTCACGTCTACATCGAATTGGGGAATGTCCGGAGCAATGCTCAGCACTGGGACGTGCCAGCTGAAGCCCCAGAGCTCGGAGAGGACGGGGGGCTGGAGgttgtgcctgtctgtgtgatgAGCTGTTGATCAGCTCCAGTGCTTTTGACCCATTTATAGGTGGACCTGCTGAAGGCCCCCAGGTCCCGGTGGATAAACCGCTCCATGTGTATATATTCTGTACAGAAAGAAAATCCTAACAGCAATGGCAGCCAGTAACCTTTCGGTTTTAACTTTTGTCACGTAAAGATCAGCAGTTTCAttactgtaaaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19445 True 2539 lncRNA 0.57 1 30213172 30215710

Neighbor

gene id symbol gene type direction distance location
AMCG00016776 NA coding upstream 57 30178824 ~ 30213115 (+)
AMCG00016771 NA coding upstream 90101 30118014 ~ 30123071 (+)
AMCG00016764 NA coding upstream 153890 30054798 ~ 30059282 (+)
AMCG00016763 psme3 coding upstream 166869 30036255 ~ 30046303 (+)
AMCG00016761 NA coding upstream 324052 29881009 ~ 29889120 (+)
AMCG00016778 arf1l,LOC101077609,LOC103369524,LOC100699666,LOC104938681 coding downstream 38826 30254536 ~ 30255713 (+)
AMCG00016781 NA coding downstream 45976 30261686 ~ 30262981 (+)
AMCG00016777 NA coding downstream 51273 30266983 ~ 30278893 (+)
AMCG00016782 LOC107688136 coding downstream 143757 30359467 ~ 30360383 (+)
AMCG00016785 NA coding downstream 162036 30377746 ~ 30410379 (+)
G15605 NA non-coding upstream 193485 29930664 ~ 30019687 (+)
G15591 NA non-coding upstream 319678 29890916 ~ 29893494 (+)
G15505 rara,LOC106578316,LOC108434941,LOC107571738 non-coding upstream 786555 29425900 ~ 29426617 (+)
G15475 NA non-coding upstream 899464 29233750 ~ 29313708 (+)
G15461 NA non-coding upstream 999565 29213230 ~ 29213607 (+)
G15730 NA non-coding downstream 213343 30429053 ~ 30431794 (+)
G15817 NA non-coding downstream 689900 30905610 ~ 30906839 (+)
G15847 psmc5,LOC107745657,LOC107684752 non-coding downstream 790187 31005897 ~ 31007006 (+)
G15853 NA non-coding downstream 817359 31033069 ~ 31033321 (+)
G15961 NA non-coding downstream 1259597 31475307 ~ 31476218 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other upstream 99888 30109599 ~ 30113284 (+)
AMCG00016769 NA other upstream 105445 30022607 ~ 30107727 (+)
AMCG00016772 g6pc other upstream 129644 30072938 ~ 30083528 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other upstream 956348 29234504 ~ 29256824 (+)
AMCG00016731 NA other upstream 1451980 28743360 ~ 28761192 (+)
G15659 NA other downstream 20744 30236454 ~ 30236841 (+)
G15855 LOC105013322 other downstream 843630 31059340 ~ 31061145 (+)
AMCG00016820 NA other downstream 1257996 31473706 ~ 31493104 (+)
AMCG00016829 NA other downstream 1485959 31701669 ~ 31731446 (+)
AMCG00016830 NA other downstream 1512846 31728556 ~ 31751113 (+)

Expression


Co-expression Network