G15673 (psme3,LOC106589310,LOC107706898,LOC107669474)


Basic Information

Item Value
gene id G15673
gene name psme3,LOC106589310,LOC107706898,LOC107669474
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30038790 ~ 30041875 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU19476
CTATTTTAGAAACCAGCTTTGCCCTTGTGATGTAGTATCTTGAGATCTGGTCCAGATAAGAGGCTGCCTCCCCTTCTACAGTTCTCAGCTCTGCTACCGTCTCCTCCTGAATAGACACGCCAAAGTTGTTGCCGTCTTCTATTCTAGGAATTAACAGCTGCACCCACATTTTGACTGTGTTGCATTTCTCGATCAGGGTTCTGATCTCCGGCTTGACCTTTTCGATGAGGTCCACCAGCTTATTGTTGCTCTTCATCATCCCCCCTGGCATAACAAACACCTTGGTGCCAGCCTGGGAGTGGTCATCTCCTGCCCCATCTTCCAGCTTCCTCTTCTTGGTGTTTTGCTGCAGAGGGAAACAAACAGGACATTAGTGAAACCCCATTCTGGGTTGTTCCTCTCTGTGCCGAAAGCATTATAGGCATGTGTTGAATTTTGAATGCCCCTCACATTCCCATGCAAGAGACGGAGGCTTTTACAATGCGAGGCAcgtgacacagacacacagcctgtATTTAATCACATACATGTAAGCGGAATCCCCCGCCCCACACCGGTCAGGCTCTTAAATCAACAGCACTTACAGGTTCTAATCCATCATGGCTGTTCGTCAGGAGGATGGGATCCGGTACGGTTAAGTTGATTTCCGAGTGAATTTCTTTCAACTCGTTAATGTTTAAGATTGGGTCctgaaaaggggaaaaacaagatTGGGCACATAAAAGGTAGCAGGGTGAAAGTTTAGTAGCTCAGTCTTTAGCCTATAAATTGAATCACAGtttgaataaactgaaaagCCCCGTTAATCTGCAAAACCCTGGCATCAAGCTGCTCTTTAAGCTCCAGAGGACTGCAGTGTGGAGACATGGAGCATCCCTACTCCTTACCCCCCAGATCCTGAAAGTGATTAATGAGATAATGATTAGGAAACCTCACAAGGGGTTTAAAGATGCATTACCGGTTACTGCTGCTGCATACTGTAAATAAAGAACAGACTTATCAATATTGTTTCCTATCTTTCTTCAAGCTGGACTGCATAATGAAATAcatccgttttttttttaaacatggagACAGAGGGGGAaatcaaacaaagaaaccaCTTACCTTGAGAAAATGATCAAGTTCTAATAACTTCTTTGGAAAGAAAGTTGCAACTAAGTCTTCAgcctaaacaatacaaaacaaaatagcttATCACAGGTTCTCATATT
>TU19477
CTATTTTAGAAACCAGCTTTGCCCTTGTGATGTAGTATCTTGAGATCTGGTCCAGATAAGAGGCTGCCTCCCCTTCTACAGTTCTCAGCTCTGCTACCGTCTCCTCCTGAATAGACACGCCAAAGTTGTTGCCGTCTTCTATTCTAGGAATTAACAGCTGCACCCACATTTTGACTGTGTTGCATTTCTCGATCAGGGTTCTGATCTCCGGCTTGACCTTTTCGATGAGGTCCACCAGCTTATTGTTGCTCTTCATCATCCCCCCTGGCATAACAAACACCTTGGTGCCAGCTAGTGGACAGAAAGGAAAAGAACACACCTTCACACAGCCTGCCACCACACACTCCACCCACTTTGCTGCATTCATACACACCTACACTATATAAACAAAGCTGGTGAAGCCAggcattgaaaaagaaaaaaaaa

Function

symbol description
psme3 Predicted to enable endopeptidase activator activity. Predicted to be involved in positive regulation of endopeptidase activity; regulation of G1/S transition of mitotic cell cycle; and regulation of proteasomal protein catabolic process. Predicted to be part of proteasome activator complex. Predicted to be active in cytoplasm and nucleoplasm. Orthologous to human PSME3 (proteasome activator subunit 3).

NR:

description
PREDICTED: proteasome activator complex subunit 3 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19476 True 1214 lncRNA 0.45 5 30038790 30041875
TU19477 False 426 lncRNA 0.46 4 30039795 30041875

Neighbor

gene id symbol gene type direction distance location
AMCG00016768 NA coding downstream 2748 30019515 ~ 30036042 (-)
AMCG00016767 NA coding downstream 24855 30008137 ~ 30013935 (-)
AMCG00016766 arl4d,LOC107552768,LOC106579387,LOC107706901 coding downstream 41933 29993530 ~ 29996857 (-)
AMCG00016762 dhx8,LOC107706906 coding downstream 134134 29893213 ~ 29904656 (-)
AMCG00016758 med24 coding downstream 324325 29701416 ~ 29714465 (-)
AMCG00016765 NA coding upstream 25446 30067321 ~ 30071224 (-)
AMCG00016774 NA coding upstream 46972 30088847 ~ 30099607 (-)
AMCG00016773 NA coding upstream 81976 30123851 ~ 30139691 (-)
AMCG00016775 NA coding upstream 119918 30161793 ~ 30174288 (-)
AMCG00016779 gosr2,LOC107654523,LOC107721531,LOC107674598 coding upstream 174369 30216244 ~ 30223409 (-)
G15585 NA non-coding downstream 231657 29802895 ~ 29807133 (-)
G15525 NA non-coding downstream 774123 29261312 ~ 29264667 (-)
G15448 NA non-coding downstream 972402 29066111 ~ 29066388 (-)
G15365 fam171a2,LOC106600878,LOC106607454 non-coding downstream 1342870 28695698 ~ 28695920 (-)
G15364 NA non-coding downstream 1356452 28681838 ~ 28682338 (-)
G15675 NA non-coding upstream 700 30042575 ~ 30044565 (-)
G15690 NA non-coding upstream 67578 30109453 ~ 30113284 (-)
G15708 NA non-coding upstream 162947 30204822 ~ 30205115 (-)
G15711 NA non-coding upstream 165812 30207687 ~ 30208537 (-)
G15716 NA non-coding upstream 191673 30233548 ~ 30236867 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other downstream 813203 29201872 ~ 29225587 (-)
AMCG00016732 NA other downstream 1253283 28781472 ~ 28785507 (-)
AMCG00016712 NA other downstream 1881590 28130012 ~ 28157200 (-)
G15076 NA other downstream 2610139 27424893 ~ 27428651 (-)
G15067 NA other downstream 2634868 27401676 ~ 27403922 (-)
G15706 NA other upstream 159584 30201459 ~ 30202351 (-)
G15787 NA other upstream 484417 30526292 ~ 30529500 (-)
AMCG00016815 NA other upstream 1338672 31380547 ~ 31388268 (-)
AMCG00016847 NA other upstream 2219674 32261549 ~ 32267968 (-)
G16247 NA other upstream 2381183 32423058 ~ 32423438 (-)

Expression


Co-expression Network