G15675


Basic Information

Item Value
gene id G15675
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30042575 ~ 30044565 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU19480
TGCTTCACAGCTGAGAAAAGAGCACATCATGAAAAGAAAACTCCCCAACCAAATAAGGAGACAGCGGTttctctttaataaaaaaaaatgactatgAAGCAGGGCGATCCCAAAACCCAGTTGCAGGAGGCCCCACAATGCACCCAATCTGCGCTGTGTGAACAAAGGGAGAGAGCTTACAAGCACCAGTTTCAAGTTCATAGTTTTCAGCCAGAGCATAAATGAAAGAGTAAGTGCACGGCCTTGCAAAGGACAGGTAGTGTAAAAGCACATCGCATTTGGAAACTAAGCCCATCAAGCTGGCAGTATCTGTATCGCTTTATTTACattgagagaaacaaacaaaacaaaaaagcacttaATAACCAAGAAAACACCCAACACTTCAAAAACCAGGAGCGCTACCATTCAAGAATCAGGAGAGGGAGTACATGAAAAATTCATAAAAGAACAGGAGAGGAAAGTACAAACAGTCCAATACTGAATGCAGAGGTCTATAAAAGACCGACTGGCAGCATTTTCTCTGTTCATTGTGTCTGAGGGGTTGCATCCCAGGAAGCCGTGGACTGGCTTTGTCTTGGTCAAGTTTCCCCTCCCGACCTGGGTACTCTCAAAACATTTAGCTCCGGGGGTAATTAAGCCACAGCCTGAGCAAAACAGTTTCCAAAGAGGTGTACAAAAATTCAATTCTACCgcttatacaaaaaaaaaaaaaacactatggCGTGGCTGGCAGGACAGTCAGGATAAATTGTCTGTTTTAAAAAGATAATATAAATGATATGcggtgtgtgggtgtgcgtgtgtgtgcgcgcacatATGTGGAAGCGAAGAAATACCCATATTGCATTCTGAGTGGGGAAAACAATgtaattgcaaaacatttttaccaaaagtaattatgtattatagACAATTAAGAGGGGGGGATGTTGTACACCAAGGCTGTCAGGAAAGCAATCCTTATTCCAATaagtgaagaaataaaatgtttattcaaatgaaaaataaaaataaaataaaactgggtgGGTACATTTTTAAGGGGTGACTGGGGTAAAATGAAAAGTTCActtcaacaataaaacaaaactcctGAAATCAAAACTAGAATTTGTCTTTAATAGAGGAGGCTCCTGGTTTGAAAACACCAGGATATACTGTAAAACAAGAGAATGGAGCTGCATGAATTTCCAAAAGCTtccaattatttcatataaatataaaacaaaacaaaaacgctgaaaaacaaatacaaaacaagcatTCTCTCTCCaaaaaacagaccaaagatTTAAAAAGGAGTACCAATTCTGtcagttataaaaaataaaatgacaataattGGGAGGAAACCCTCTCCTTTTTTAGATGTTATAGTTTAGAGAGAGAAAGCTTATTCGGTCTCTTTGTTCTTTTGTGTATTTCCAGCACTCCCCCCCGGCTTCCACAGATTATGTGTTGGAAGAGATCAGTCCATTTGAACTAATAAAGAGCATTCTCCAAAGGAACACCTGAGGTTTAAAATCCCAACacattttgtggtttgtttttaattctaaaattaaaaaaaaaaaaagcttgatgTCTCCTGTGCTTTACAATTCCTGCCAGTGAATCCCAACTCAGTCACAATAGTCCACTTGATCAGAAACAAACCAAAGGCAGCCAGTGGTCTCTGGCCATGATGACAGTACTTGGGATGTCCTGCAATGTTAGTACAGAGTCTCTGCGTTGCTGCTCCGTGGTCTCTTGATCTTCTCAATGTTTTTCAGGATCATGTCATGTAATGTTACCTGTGTTGGAAGAGATTCAATTCAGAGGCAGTTTCAAAGCTGTATCCTAGAATCCTACCTACTAGACTGAGGGGTAAGTATTCAGAACTAAACATCATAAACCAGTGTGTTCAGTAAACgtgaa

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU19480 True 1920 lncRNA 0.50 2 30042575 30044565

Neighbor

gene id symbol gene type direction distance location
AMCG00016768 NA coding downstream 6533 30019515 ~ 30036042 (-)
AMCG00016767 NA coding downstream 28640 30008137 ~ 30013935 (-)
AMCG00016766 arl4d,LOC107552768,LOC106579387,LOC107706901 coding downstream 45718 29993530 ~ 29996857 (-)
AMCG00016762 dhx8,LOC107706906 coding downstream 137919 29893213 ~ 29904656 (-)
AMCG00016758 med24 coding downstream 328110 29701416 ~ 29714465 (-)
AMCG00016765 NA coding upstream 22756 30067321 ~ 30071224 (-)
AMCG00016774 NA coding upstream 44282 30088847 ~ 30099607 (-)
AMCG00016773 NA coding upstream 79286 30123851 ~ 30139691 (-)
AMCG00016775 NA coding upstream 117228 30161793 ~ 30174288 (-)
AMCG00016779 gosr2,LOC107654523,LOC107721531,LOC107674598 coding upstream 171679 30216244 ~ 30223409 (-)
G15673 psme3,LOC106589310,LOC107706898,LOC107669474 non-coding downstream 700 30038790 ~ 30041875 (-)
G15585 NA non-coding downstream 235442 29802895 ~ 29807133 (-)
G15525 NA non-coding downstream 777908 29261312 ~ 29264667 (-)
G15448 NA non-coding downstream 976187 29066111 ~ 29066388 (-)
G15365 fam171a2,LOC106600878,LOC106607454 non-coding downstream 1346655 28695698 ~ 28695920 (-)
G15690 NA non-coding upstream 64888 30109453 ~ 30113284 (-)
G15708 NA non-coding upstream 160257 30204822 ~ 30205115 (-)
G15711 NA non-coding upstream 163122 30207687 ~ 30208537 (-)
G15716 NA non-coding upstream 188983 30233548 ~ 30236867 (-)
G15746 NA non-coding upstream 385364 30429929 ~ 30431998 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other downstream 816988 29201872 ~ 29225587 (-)
AMCG00016732 NA other downstream 1257068 28781472 ~ 28785507 (-)
AMCG00016712 NA other downstream 1885375 28130012 ~ 28157200 (-)
G15076 NA other downstream 2613924 27424893 ~ 27428651 (-)
G15067 NA other downstream 2638653 27401676 ~ 27403922 (-)
G15706 NA other upstream 156894 30201459 ~ 30202351 (-)
G15787 NA other upstream 481727 30526292 ~ 30529500 (-)
AMCG00016815 NA other upstream 1335982 31380547 ~ 31388268 (-)
AMCG00016847 NA other upstream 2216984 32261549 ~ 32267968 (-)
G16247 NA other upstream 2378493 32423058 ~ 32423438 (-)

Expression


Co-expression Network