G15716


Basic Information

Item Value
gene id G15716
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30233548 ~ 30236867 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU19535
aggggagggaaggagggaagagAAAGGGATGACTGAAACAGGGTGTACTAAAGAACAGGGGAAacctgaaatatataaaatggtgGAGGGGAGAGTATAGTGGAGGGATGGACATCAGAGAAATAAAGGGACAGGCCAAAGCAACAGAGAGCAGATGGGTACAGAGGTGAATACAGGCAAGCGGACAGAAGATAAAGGAAGTGACTGAGGGAGGAAAGGGAGAGATGACTCTTGTTTCCTCCTCTTGTGGTCTTACTCGAATCATAATGGCACATGGAGCTCTTCTGAACTGAAATGGGATCGAAGGTGGAGAGCAGAGACTTCCAGGATGCTGGGTCCCATTGAAAGATGCACTCACTTGCCAGCGCCAGGCAATCATAATACAGTAGGAAAAACCCTACGGCTGCAATTCAGACAAATCTAACTATATGCAGTATACAcgatattcttttttttttttattgtaactaAACTCCCGATGCCTTCTGCAAACAGATTCTCAGCATCTCCCCGAGTGTTGTAAACTAGGCCTTTCCATGCGTGGTGAAAGCATGTCTTCTCGCTGTGGCATCACATTGTTGTCAGTGCTAAGGAGCAAATTGAACTGAAAAGAAATGGATGGAACCCATGGCCACCTGAAGGCACCACAGGTATTCGGCTCAGTTCCCAGAGACTGTAACATGGGGCTGAAGCCAGGATCTCACTACCAGAGAAGAACATGCACCTGTCTGAGGGCTGAAGATGGTGGACTGCACTTTTGACAAGGTACCTTTTGGCCGGGGGATCAACACAGACTCTTAATTCAGCACCGCAgactgtctgtttgtgtgtctgagagtCTGTCAGTGTATACAGGGTATTGAACTAGTAGCACTGGATGTTTAAACCCACTATATGTCTGTTTCTCTCACAGTGTACCTGTCATACTGCCTGTTGTTTTAGATTATCTATCTGCCTGTCTGTGCATACAAAAAGGGGGACTCAAggacctgtctgtctgtgtgtgcgtctgtctggcGTATTGTAAATAGGAGAATTAGAAGCACTTAAGTATGTTAAGCCCTGGAtaacagttttgtgttgttgttgttagttttttgtgccagaaatctaaaataatacaaataaaaagagaagGGAAGCATGTAGGGATTAGGGAACTTCTTAAGTCGGTGtccaacattattattattattatttatttattggcagatgcccttatccagggtgacttacaggacAACATCGCAACCTCTAACCttaaaaatcttttattttattttttcttttcttcccacAAGGACATTTAAAGGTCCTTGAGGCCTCATTGATCAAGGGATTTTTGCtcattttcttcaatttttgCTACGGGCACAAATCAAGCCTTTTAACGTTAGCAGAGCTCGCGTCCTCCatccagcccccccccccttttccaGTTGGATATTTGCCTTTCATGTTGCTCATTATTTGGCTTTCTGTATTAACAATTAGCACAAATTGCACCGTTTATCTTTAATAAAGCAGACCTCTTTCTCTGTGATTAGGGTGCAGTGTACACAGAGTCCTAATGTGTTCTGGTCACGTATGGCCAAATTTCCTagtaagttttttttattgaaactCAGCGTTCCTGAGGGCTGATTTTAGGTGCATTTGAATGAGCTTGCATAGGCTAAATCAACCAGTCTCAATAAGAATTTTGTAAAGTCCATATAGGCCACTAAGGCCCCCAGGAGCTTAGCTCAGCCTCCAACATTATACCAAATATGATCACCCCACTCCCCCCACTCCCCTAATTTCTTACCGAAACCTGGATGTTATTAGAATATTACATCGTCACTGTATCAGACATCTGTTTTTGTTGGCATTCAGTCAGGATAATCACAGCCAGTGCCTTGATGGGATACAGGAAATCCCCCAGAGCCGGAAAATGCTCCCTTTAAACTGGCCGCATTGATCAAGCCCagtcatttgtgtttgtgtgtccatGTGCTTTAAATAGGTACGCTGCTTCATTCGTTTTTTTGGGGGATGCTTTTAATCATCCTGGTTAATTAGACCTGTGGCCGCTTGCTTCTTGAAAACTGAGCTCTACACCACAATCCTCTCTCCAAATATTGTTCCATACCTGCAATAGTGTTCAGTCATGTTTACAGAACTAAGATTGCCAATGAGTATCACCTCCTGTATACAACCCTGTCAGAGTCATTATATCTGTAGAACAAAGGTGACCGAGAACCTGTGGGTTTTAAGAGTCCTCTTTAACGGAAGACCtgacttaaaaactgtgctgcTTACTATCAGCTTTATCACGACCCCCTGCTTGTGTATCCAAGCAGTATGTAGGTCTTTTATTTTGATCTATGAGGTACGCATGCCTTTCACCACAACCcaaaccattttcaaaataaaatttaaaaatagctaCTTTTGTATGAcagaatacagtacagacagtaTATTGTAAAACATATCAGGACAAGCAACAAATACAGTTGTCCTCATTGTATTTACTAGgggcattttaattatatttattgattccttttgaaataaagtattttcctGTTCATCCTTTTGACAAAGCACAAAGCCTTCACCATAAATTGTAATCAACATAAGCAGTACACTGTtgaacataatataaaaaaaattgtactgGGGATGCACTTCGTGCCCTTATAAACACTTTACCTAGAAAAGGACCTCAATTATAATCCAATACTGGCAGGCTTGTACCAATACTTTTGGTAATATTCTGTACATTCTGTTTCTAGGTATGTGTGTTAAAATGCTATCTTATAAACAGGAGATGCTGTCCTTATAAATGGATGCACTGCATCTTTAACAGGCAGTAGCACAATATTAACTGCATACAAACAAAGTCACACTGAGTCATGGCTTCAGTAACAAGGGAATTTAAATCTGGATATTATTTTTCTACCTCACTTGTACAGCCTgtagacaaataaatatttatattatttatctgctttcaatatataaatatatacaaatatatatatttaggctGTGCATCTGTATTGAAATCAAGTgaaatcatttttctttctggaCTAAACATGTTGACTGGGTTGTACATAATCCTCTTTTCCtcatgtgatgtttttttaaatatatattcttatttaaatgaaaaataaatatattcctttgtaaaaaaaaaaaaaaaatgtgtgtgtgcctgaAGTATTTCTGTGGTCTATGGCTTTAatgtcaatacaaatataaaaataaatgaatatataaataaatgcacaaataaatgttttgttatttgtattgttcattataat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19535 True 3320 lncRNA 0.39 1 30233548 30236867

Neighbor

gene id symbol gene type direction distance location
AMCG00016779 gosr2,LOC107654523,LOC107721531,LOC107674598 coding downstream 10139 30216244 ~ 30223409 (-)
AMCG00016775 NA coding downstream 59260 30161793 ~ 30174288 (-)
AMCG00016773 NA coding downstream 93857 30123851 ~ 30139691 (-)
AMCG00016774 NA coding downstream 133941 30088847 ~ 30099607 (-)
AMCG00016765 NA coding downstream 162324 30067321 ~ 30071224 (-)
AMCG00016780 NA coding upstream 107 30236974 ~ 30241569 (-)
AMCG00016794 NA coding upstream 228290 30465157 ~ 30467804 (-)
AMCG00016792 NA coding upstream 314261 30551128 ~ 30557792 (-)
AMCG00016793 NA coding upstream 321389 30558256 ~ 30563594 (-)
AMCG00016801 psmc5,LOC107753303,LOC107745657,LOC106579096 coding upstream 766239 31003106 ~ 31008426 (-)
G15711 NA non-coding downstream 25011 30207687 ~ 30208537 (-)
G15708 NA non-coding downstream 28433 30204822 ~ 30205115 (-)
G15690 NA non-coding downstream 120264 30109453 ~ 30113284 (-)
G15675 NA non-coding downstream 188983 30042575 ~ 30044565 (-)
G15673 psme3,LOC106589310,LOC107706898,LOC107669474 non-coding downstream 191673 30038790 ~ 30041875 (-)
G15746 NA non-coding upstream 193062 30429929 ~ 30431998 (-)
G15845 NA non-coding upstream 761767 30998634 ~ 31002128 (-)
G15854 NA non-coding upstream 796203 31033070 ~ 31033320 (-)
G15864 NA non-coding upstream 866512 31103379 ~ 31106792 (-)
G15890 NA non-coding upstream 935318 31172185 ~ 31176602 (-)
G15706 NA other downstream 31197 30201459 ~ 30202351 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other downstream 1007961 29201872 ~ 29225587 (-)
AMCG00016732 NA other downstream 1448041 28781472 ~ 28785507 (-)
AMCG00016712 NA other downstream 2076348 28130012 ~ 28157200 (-)
G15076 NA other downstream 2804897 27424893 ~ 27428651 (-)
G15787 NA other upstream 289425 30526292 ~ 30529500 (-)
AMCG00016815 NA other upstream 1143680 31380547 ~ 31388268 (-)
AMCG00016847 NA other upstream 2024682 32261549 ~ 32267968 (-)
G16247 NA other upstream 2186191 32423058 ~ 32423438 (-)
AMCG00016859 NA other upstream 2260640 32497507 ~ 32507319 (-)

Expression


Co-expression Network