G15730


Basic Information

Item Value
gene id G15730
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30429053 ~ 30431794 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU19550
gaaaatatatatgtacatatatatatataatataagtatgatttgcattttgttattttagtttcttatgCATTCTTTAATGGGATGAATATAAACCAGCCTTATCCTTGTGCAGTCGGTCAGTCAGGCTGCTGTAGTTTGTCCCTGTTTAACTGCCCTTGTATCCTTGTTATTTTGAGGTCTGAAGGAGACAGTGCTGTGCAGGGGGTGCTCTGATTTAGCACACATGGGAGGCCCAGTTTCATTCCTTAATGGGACCTTCAGAAAGTAATGCTTTATAATGCACCTTCTTTGAGGAATTATGATTTGTAGTTCCATTCACATCAGGAATGCAATCAGAATTGAATTGATTTGAGGCAGAGGAGGCTGTCATGTCTGGCTTCCAACTCATGtattacaaaagataaaaaatgaTTCTGCATTAGATTAGcctaattgaattattttaattgtccaatttttttaatctatgaaCTCAAAGATCTAAGACACAGTCAGTCCTATTTACCGGGACTGTTATGCCGTCACACCCTGATTCTTGGACGCCCCAGAGCACCCACTGTCTCCATCAACCAAGCACACTGGACACTGAGCACATAGGCTTCCCTGACTGGCACTGCCAACATGGAgagaagtggggggggggagacaatgacaaaaaacaatctAATCTTCTTTGCTCTTAATCTTGCAAAGTACCCTCCTCTTTTTCTACATTCATGAATGCTTTCCAAACCTGACAATGTCAATTGCTCTTTCCAACTTGGCACAAATCACACTGCTGGACAAGGAAAGCATCTACGCTAGGGAagattggggtggggggagggtggGTGTTCACAGCCTTTCTAATGAGATATTAGAATAAGAATAATGGCCAATATGTTCtgggttttattataaaataaatactggtaATGAAATAGCAGCATTTTGGCAATCTCTATCCAGCCTTCCAGCAGGATTGGGGGGGAGTACCTGGCTTTACTGGGGTTGATTATACTTTcagaaatatgaattatttcTCCCCTTGCTTCTCCCTTGCTTTACCCAGGGGCCCTTGCCACTGGGCTTCACACACAGGAAGGTATCTGGGAATGATATCCTGCCCTTCCCTTCTGCTCCTAAACCCTGATGCTGCTGCATAGGAACCGTTGCTGGGAGGGGAAAGCAGGAATTCTGCCTGCAGTGACAGGAGGCCCTTAGAGATAGGGCTGCTGGAATATAAGGGATACTTTCACTGCTGACTGTATTAGTCACTGGCTCTTACATTCACAAGCCCATGCAGTTGATTGAATAATCACTTCCTTACATATTGCTTCACTCCTCCCCaagctaaaaatacattattttggtttCGTATAAAATCGAGCAACAGCATAGCATTTAAAGACACCTGCTCTGCTCGCTTCCTGCTTACACTGCCAGTGACCAtattcagacagacagcaagTGCAGcggaaaacatattttaactgtgccagttaaaaaatatttcacaaacatAAAAGGTAAATGGCTAACATCTTTAcagaaaaaagtacaaaatgcaCACACCTCCCACGTAAATACTAAATTTACGTATCGTTAGTAACTGAATTGAACTctttagtttaaatatatttacaaaatgtatgttttcttaaCCTTCAACTACAGATCAGTGGCAGTGTCCCTTATTGACGCAAGTGGAGAATGATTCATGTTTGCCATTGAGTGACTGTTGCAACCCTAGTTCAGTAAGGGCTTCTATCTGAGAGAGACGGGAGGGCAGCGAGAAGGAAATACTGCTGTGAATAAAAACCCAGCCTAACTCTTAGCAAAGGGGTGAGCGTGAAAGCACATTTCAGATTGCTCTGTAAATCAAAAGTTATAGCAGATTAAAAAGTATCATTctgattgctttttttgtttgttttttagaagaaaattcaaatatatatatacacatattttttcatgatttattcattttgaaggCTGTCTACATGAATGTGTGGGTGTTCAAGCTCATggcatcaaaaaaaaaaatgtaaatagaccaAATCATTcttagagagagaaagagaatcaAACAAATTTTAtgtccagattttttttttatatatatacagagaggtaaaaaaaaatcaaaaaaagtcacaaaataatgcatgtatATTCTCAAGCAATTGCACGGTgcagttagaaaaaaaaatgttgtctctatgttgaaaaacaactgAACGTGACTTCAAAGATCTAATACTGTagaagaagtttttttttttctttcctgttggTACCATGTGTTAGTGGCTCAGGCATGAGATTTACTGTGGTCTGTGAtaccaagaaatacaaaagatGATGGATATGAGAATGATGTGACAATATGAGAGCAAGACCTTTCTATAAACCAATGATGGTGTTTTTCTAAGAGTGATGCTTCCATTTGTAGAGTAGTGTGATAtatgaacaattaaaaataaaaataaatatgaatactaAAGAATAAACTAATCAGTCTGGATGCCATGATATTCTGTGAgaaatgtacttttttgtgAGAATACTCTGATCACAGAGACTGCTTCTTTTTGTACAtaattgctgtgtttgtgtgactaATAAAGTGTAGCTCTCTTGTACAGCTGAGGCGTGGGTTATTATCTGTGCAAAACCAACAAATACATACCTTTGTCTTACCCATTGCCCACTTTCTTCCTTCTATTCCTTCTACCTTCTCACTGGTGAATCACC

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU19550 True 2742 lncRNA 0.40 1 30429053 30431794

Neighbor

gene id symbol gene type direction distance location
AMCG00016785 NA coding upstream 18674 30377746 ~ 30410379 (+)
AMCG00016782 LOC107688136 coding upstream 68670 30359467 ~ 30360383 (+)
AMCG00016777 NA coding upstream 150160 30266983 ~ 30278893 (+)
AMCG00016781 NA coding upstream 166072 30261686 ~ 30262981 (+)
AMCG00016778 arf1l,LOC101077609,LOC103369524,LOC100699666,LOC104938681 coding upstream 173340 30254536 ~ 30255713 (+)
AMCG00016784 NA coding downstream 3059 30434853 ~ 30439443 (+)
AMCG00016783 NA coding downstream 16486 30448280 ~ 30453102 (+)
AMCG00016788 NA coding downstream 24180 30455974 ~ 30461368 (+)
AMCG00016786 NA coding downstream 41188 30472982 ~ 30478017 (+)
AMCG00016787 NA coding downstream 49948 30481742 ~ 30483527 (+)
G15651 NA non-coding upstream 213343 30213172 ~ 30215710 (+)
G15605 NA non-coding upstream 409366 29930664 ~ 30019687 (+)
G15591 NA non-coding upstream 535559 29890916 ~ 29893494 (+)
G15505 rara,LOC106578316,LOC108434941,LOC107571738 non-coding upstream 1002436 29425900 ~ 29426617 (+)
G15475 NA non-coding upstream 1115345 29233750 ~ 29313708 (+)
G15817 NA non-coding downstream 473816 30905610 ~ 30906839 (+)
G15847 psmc5,LOC107745657,LOC107684752 non-coding downstream 574103 31005897 ~ 31007006 (+)
G15853 NA non-coding downstream 601275 31033069 ~ 31033321 (+)
G15961 NA non-coding downstream 1043513 31475307 ~ 31476218 (+)
G15966 NA non-coding downstream 1072285 31504079 ~ 31504552 (+)
G15659 NA other upstream 192212 30236454 ~ 30236841 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other upstream 315769 30109599 ~ 30113284 (+)
AMCG00016769 NA other upstream 321326 30022607 ~ 30107727 (+)
AMCG00016772 g6pc other upstream 345525 30072938 ~ 30083528 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other upstream 1172229 29234504 ~ 29256824 (+)
G15855 LOC105013322 other downstream 627546 31059340 ~ 31061145 (+)
AMCG00016820 NA other downstream 1041912 31473706 ~ 31493104 (+)
AMCG00016829 NA other downstream 1269875 31701669 ~ 31731446 (+)
AMCG00016830 NA other downstream 1296762 31728556 ~ 31751113 (+)
AMCG00016841 NA other downstream 1820014 32251808 ~ 32260627 (+)

Expression


Co-expression Network