G15817


Basic Information

Item Value
gene id G15817
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30905610 ~ 30906839 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU19650
gtgtAGCTGAGATTCCGCTGAAAACAGCCATGTGTGCTTTGTTTACATCGCGTACTTCTTGGTTTTAGAAATCCCGTACGCAATGAGGCTGGCATTGCCCAATGGAGAAGCTGTCACTATAGGTAACACATGACTTCTAGAGCTGCCTTTTGTTTTCTAGCCAATCGAAAAAATCCTTTCTGAGCTGCTGCATAGATCACCTGATAAGGACCGGCTTACAGGCGCTGCGAAATACAGCTCCAGACAGAGACGGTGGGGTGGGTAGACGCAAGATGGCATCGCTATTCTTTCCATAACTCGGACATAATACATACTATTGTTATAAATGTGGCATCTATGGATtcataagagcgtcagctatgGATATATGCAGgACTGTCCAATGTGCTGGGGCTCGAAGCTGAAGATGACAGAAAGGATTCTGGAGCAGACTCCAGCAATACGAAGGGTCTTTGCGGATGACAAAAGCCGATGTCCACTACCAAACTTAACGTGGCAAGATATTTCAGTTCTGGAGTCTGTGAACAATGGACTGAAGCCTGTAGCAGACTTGACCGATGTTTTGGCAGGAGAAACTTATGTTACTGTTTCAGCTGTCACCN

Function

GO:

id name namespace
GO:0030031 cell projection assembly biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19650 True 602 lncRNA 0.34 2 30905610 30906839

Neighbor

gene id symbol gene type direction distance location
AMCG00016798 NA coding upstream 67256 30837725 ~ 30838354 (+)
AMCG00016796 NA coding upstream 328013 30576421 ~ 30577597 (+)
AMCG00016795 NA coding upstream 335788 30564566 ~ 30569822 (+)
AMCG00016789 atxn7l3,LOC107660606,LOC108276986 coding upstream 355180 30531032 ~ 30550430 (+)
AMCG00016791 NA coding upstream 377803 30515361 ~ 30527807 (+)
AMCG00016797 asic2,LOC106600659,LOC108411330 coding downstream 17174 30924013 ~ 30949874 (+)
AMCG00016799 smarcd2,LOC107569192,LOC107694073,LOC107684754,LOC107560559,LOC107753305 coding downstream 77634 30984473 ~ 31001821 (+)
AMCG00016805 NA coding downstream 166155 31072994 ~ 31103613 (+)
AMCG00016803 NA coding downstream 200590 31107429 ~ 31111908 (+)
AMCG00016804 NA coding downstream 206888 31113727 ~ 31129595 (+)
G15730 NA non-coding upstream 473816 30429053 ~ 30431794 (+)
G15651 NA non-coding upstream 689900 30213172 ~ 30215710 (+)
G15605 NA non-coding upstream 885923 29930664 ~ 30019687 (+)
G15591 NA non-coding upstream 1012116 29890916 ~ 29893494 (+)
G15505 rara,LOC106578316,LOC108434941,LOC107571738 non-coding upstream 1478993 29425900 ~ 29426617 (+)
G15847 psmc5,LOC107745657,LOC107684752 non-coding downstream 99058 31005897 ~ 31007006 (+)
G15853 NA non-coding downstream 126230 31033069 ~ 31033321 (+)
G15961 NA non-coding downstream 568468 31475307 ~ 31476218 (+)
G15966 NA non-coding downstream 597240 31504079 ~ 31504552 (+)
G15995 NA non-coding downstream 708381 31615220 ~ 31644515 (+)
G15659 NA other upstream 668769 30236454 ~ 30236841 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other upstream 792326 30109599 ~ 30113284 (+)
AMCG00016769 NA other upstream 797883 30022607 ~ 30107727 (+)
AMCG00016772 g6pc other upstream 822082 30072938 ~ 30083528 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other upstream 1648786 29234504 ~ 29256824 (+)
G15855 LOC105013322 other downstream 152501 31059340 ~ 31061145 (+)
AMCG00016820 NA other downstream 566867 31473706 ~ 31493104 (+)
AMCG00016829 NA other downstream 794830 31701669 ~ 31731446 (+)
AMCG00016830 NA other downstream 821717 31728556 ~ 31751113 (+)
AMCG00016841 NA other downstream 1344969 32251808 ~ 32260627 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000356_00977637_00978320 NA coding CI01000356 null 977417 ~ 978607 (+)