G15847 (psmc5,LOC107745657,LOC107684752)


Basic Information

Item Value
gene id G15847
gene name psmc5,LOC107745657,LOC107684752
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31005897 ~ 31007006 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU19680
TGGGCTGGGCAATCCCCAGGGCCTCAAACAGCTCAGGGTGCTTCACAGGTAGCTCGATCACTTCTTTGATCTCCTTGATCTGCTTATCCAGACCACCGATCATCTCATAGGTGGAGTCTGGTACCTTCTCTACCATCATGAGAGACACCAGTGGGTCCACTTTGTTAGGCAGGATCTTGTGAAGTGTGTAACTGTCATTCCGCAGAGCTACGCGGCAATTTGGGGTCACATCATTGATATCAATGTTTTTATCCACATCGACCACAAATTTTCCTTCTGGATGCacCTTGACCAGGACTTTCTTCTTATCCATGGCTCTCACCACCTCTCC

Function

symbol description
psmc5 Predicted to enable TBP-class protein binding activity and thyrotropin-releasing hormone receptor binding activity. Predicted to be involved in modulation of chemical synaptic transmission; positive regulation of RNA polymerase II transcription preinitiation complex assembly; and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of cytosolic proteasome complex; nuclear proteasome complex; and proteasome regulatory particle, base subcomplex. Predicted to be active in postsynapse. Orthologous to human PSMC5 (proteasome 26S subunit, ATPase 5).

NR:

description
PREDICTED: 26S protease regulatory subunit 8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19680 True 331 lncRNA 0.49 3 31005897 31007006

Neighbor

gene id symbol gene type direction distance location
AMCG00016799 smarcd2,LOC107569192,LOC107694073,LOC107684754,LOC107560559,LOC107753305 coding upstream 4076 30984473 ~ 31001821 (+)
AMCG00016797 asic2,LOC106600659,LOC108411330 coding upstream 56023 30924013 ~ 30949874 (+)
AMCG00016798 NA coding upstream 167543 30837725 ~ 30838354 (+)
AMCG00016796 NA coding upstream 428300 30576421 ~ 30577597 (+)
AMCG00016795 NA coding upstream 436075 30564566 ~ 30569822 (+)
AMCG00016805 NA coding downstream 65988 31072994 ~ 31103613 (+)
AMCG00016803 NA coding downstream 100423 31107429 ~ 31111908 (+)
AMCG00016804 NA coding downstream 106721 31113727 ~ 31129595 (+)
AMCG00016806 NA coding downstream 135402 31142408 ~ 31176537 (+)
AMCG00016808 NA coding downstream 176684 31183690 ~ 31230795 (+)
G15817 NA non-coding upstream 99058 30905610 ~ 30906839 (+)
G15730 NA non-coding upstream 574103 30429053 ~ 30431794 (+)
G15651 NA non-coding upstream 790187 30213172 ~ 30215710 (+)
G15605 NA non-coding upstream 986210 29930664 ~ 30019687 (+)
G15591 NA non-coding upstream 1112403 29890916 ~ 29893494 (+)
G15853 NA non-coding downstream 26063 31033069 ~ 31033321 (+)
G15961 NA non-coding downstream 468301 31475307 ~ 31476218 (+)
G15966 NA non-coding downstream 497073 31504079 ~ 31504552 (+)
G15995 NA non-coding downstream 608214 31615220 ~ 31644515 (+)
G16037 NA non-coding downstream 748036 31755042 ~ 31755427 (+)
G15659 NA other upstream 769056 30236454 ~ 30236841 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other upstream 892613 30109599 ~ 30113284 (+)
AMCG00016769 NA other upstream 898170 30022607 ~ 30107727 (+)
AMCG00016772 g6pc other upstream 922369 30072938 ~ 30083528 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other upstream 1749073 29234504 ~ 29256824 (+)
G15855 LOC105013322 other downstream 52334 31059340 ~ 31061145 (+)
AMCG00016820 NA other downstream 466700 31473706 ~ 31493104 (+)
AMCG00016829 NA other downstream 694663 31701669 ~ 31731446 (+)
AMCG00016830 NA other downstream 721550 31728556 ~ 31751113 (+)
AMCG00016841 NA other downstream 1244802 32251808 ~ 32260627 (+)

Expression


Co-expression Network