G15855 (LOC105013322)


Basic Information

Item Value
gene id G15855
gene name LOC105013322
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31059340 ~ 31061145 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU19688
CACGGATATGAAATAATGACAAGCCATTGAAAACTGACATGTTTACTTAAAAATTGTCATGTTGTGTTATACAGATTCATTCAAGTTTCATTTTcgtacaaaaacacaaaaccaaccaaaaaaattAACATGCAGCATTTGGAGTTTCATAAAAGTGCAAAAAACACTGGTCAAATTCATTAGTCACAATAAACAGGCACTGAGCATGCTTTTcgtttcaggaaaaaaaaaaaaaaaaaaacttggttaAGTACAAAGTGTAAATCTTAGGTTAGAAATTCAATATGCAACATCCAAACTGTGGAAAGCGTAAACATGCACTTTCTCCCCCGCTACATAAATAGTTAAAGTACCCCCATTGGTCCCTATATTAGATAATACTCTTTCAACGGAAAGGAGGCATGAAACGTCATATATTCAAATACAGACAGTAAACGTTGGTTTGTTGGATGCTGTTTTCATGCACCAAAAGCGGCATGCAATATCTCAGGATCTCCACGAGCtcccttttttaataaataaataaatatattaaataataacacttaTAAAACCATGTAAACATTCCTTTACCCACTAAGGGTTAACAATCAAGGAAGAGGAGGCGATTTGTTTCAAACTTAgatacatattaaacattttttttttaaatcagaataaataataaactttttttctttccaaggtTGATCAATAGCTACACGTCAAAAAgtgaaacaatacattcaaaattgACCGACTTCAGACTACGTCTGAGTGTATACAAATCAAGCAGCCACCCAAACATTGGGACGTATTGtctttttactttgattttgtGGTTCATCCTTACGTCTTCCTATCAGGCTAAAACAAATCCCGGgactttgcatatatatatatatatatatatatatatatatcacacagcATTTGAACCCcagccccccaccaccactgcGTTTTCAATCGGGAGCATTGCAATAGTGTCGCTAGTTAAGGCCAATGATGACCGCTTCTACATCTTTGGAAGGTCTCCGGTCTTTCACCAGAAAGTTGATCATGCTTTCGGATTTGATCATGAGGTTGCAGCCCAGAAAGAAGATGCCGAAAATGACAGTCAAGGAGAGGACGCACAGCACCGCTATTTGCACCACCCGCATGATGAAGAGACTGCGCTCGTCCGGAACCAGGACCAGGGAGCTCCCGTCGTTGGCCGTCACCGCGGTCCCGTTGCAGCAGTCCACCAGGGAGCCGGCCAGGTCCTGGCTTTTGTTGCCGAAGATGCCCTGTGCGATGACTGAATGGTTGAAAAAGGTCCCGTTCATCTTGGGTACCGCTCAGATGTGCCAAAAGAGTCCGCTCTACACAGGCAAATGCAGCAAATATCGGTCCAGCGCTTAAACTTTGTGTCATCAGTGAgaagaatacaatttaaaagaaattaaagaataCGTATAACGAGAAAAAAAGACTAACGAGGTTAAtgttttctcaaaatatattgcatttcgCAACAGTAACAAACGCCGGGTCGTTGGATTGTGCTGAAATCAAACTTTGAAGCTGTTGTTACCGGCACTACGCTGAATGCAGTGCATTAGCCTCGCAATTGAGTTAAGCAAATACTGGATGGCACTGTCTGTGTCTCCGACTGAAGCCAGACCAAGTGTTGGATGAATGTAAAAGTCCCCGTGGGCATTGCGCATTCGTGTTTTCTGTCTCCTACCACAGGTTTCCGTTAAAATCCTCAGGAGAAACTCCTGCCACCTGTGCGCCGGTTtcac

Function

NR:

description
PREDICTED: reprimo-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19688 True 1766 TUCP 0.42 2 31059340 31061145

Neighbor

gene id symbol gene type direction distance location
AMCG00016799 smarcd2,LOC107569192,LOC107694073,LOC107684754,LOC107560559,LOC107753305 coding upstream 57519 30984473 ~ 31001821 (+)
AMCG00016797 asic2,LOC106600659,LOC108411330 coding upstream 109466 30924013 ~ 30949874 (+)
AMCG00016798 NA coding upstream 220986 30837725 ~ 30838354 (+)
AMCG00016796 NA coding upstream 481743 30576421 ~ 30577597 (+)
AMCG00016795 NA coding upstream 489518 30564566 ~ 30569822 (+)
AMCG00016805 NA coding downstream 11849 31072994 ~ 31103613 (+)
AMCG00016803 NA coding downstream 46284 31107429 ~ 31111908 (+)
AMCG00016804 NA coding downstream 52582 31113727 ~ 31129595 (+)
AMCG00016806 NA coding downstream 81263 31142408 ~ 31176537 (+)
AMCG00016808 NA coding downstream 122545 31183690 ~ 31230795 (+)
G15853 NA non-coding upstream 26019 31033069 ~ 31033321 (+)
G15847 psmc5,LOC107745657,LOC107684752 non-coding upstream 52334 31005897 ~ 31007006 (+)
G15817 NA non-coding upstream 152501 30905610 ~ 30906839 (+)
G15730 NA non-coding upstream 627546 30429053 ~ 30431794 (+)
G15651 NA non-coding upstream 843630 30213172 ~ 30215710 (+)
G15961 NA non-coding downstream 414162 31475307 ~ 31476218 (+)
G15966 NA non-coding downstream 442934 31504079 ~ 31504552 (+)
G15995 NA non-coding downstream 554075 31615220 ~ 31644515 (+)
G16037 NA non-coding downstream 693897 31755042 ~ 31755427 (+)
G16169 NA non-coding downstream 1200566 32261711 ~ 32262672 (+)
G15659 NA other upstream 822499 30236454 ~ 30236841 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other upstream 946056 30109599 ~ 30113284 (+)
AMCG00016769 NA other upstream 951613 30022607 ~ 30107727 (+)
AMCG00016772 g6pc other upstream 975812 30072938 ~ 30083528 (+)
AMCG00016739 wnt3,LOC103381861,LOC108249203,LOC104961604,LOC104925160,LOC105936264,LOC101174231,LOC100707095,LOC108273758,LOC106589299,LOC101469754 other upstream 1802516 29234504 ~ 29256824 (+)
AMCG00016820 NA other downstream 412561 31473706 ~ 31493104 (+)
AMCG00016829 NA other downstream 640524 31701669 ~ 31731446 (+)
AMCG00016830 NA other downstream 667411 31728556 ~ 31751113 (+)
AMCG00016841 NA other downstream 1190663 32251808 ~ 32260627 (+)
AMCG00016854 NA other downstream 1437911 32499056 ~ 32503372 (+)

Expression


Co-expression Network