Gene
RNA
| Item | Value |
|---|---|
| gene id | G15947 |
| gene name | phb,LOC107661032 |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030122.1 |
| NCBI id | CM030122.1 |
| chromosome length | 54868152 |
| location | 31420744 ~ 31421968 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| phb | Predicted to be involved in mitochondrion organization. Predicted to be located in mitochondrial inner membrane and plasma membrane. Predicted to be active in mitochondrion. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; midbrain; and musculature system. Human ortholog(s) of this gene implicated in breast cancer and sporadic breast cancer. Orthologous to human PHB (prohibitin). |
| description |
|---|
| PREDICTED: prohibitin |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU19800 | True | 1204 | lncRNA | 0.38 | 2 | 31420744 | 31421968 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00016816 | NA | coding | downstream | 16800 | 31400817 ~ 31403944 (-) |
| AMCG00016811 | NA | coding | downstream | 83464 | 31336445 ~ 31337280 (-) |
| AMCG00016812 | NA | coding | downstream | 105356 | 31292282 ~ 31315388 (-) |
| AMCG00016807 | becn1,LOC102786760 | coding | downstream | 237443 | 31177556 ~ 31183301 (-) |
| AMCG00016802 | LOC105013322 | coding | downstream | 360058 | 31060351 ~ 31060686 (-) |
| AMCG00016823 | nmt1,LOC102778525 | coding | upstream | 221888 | 31643856 ~ 31653933 (-) |
| AMCG00016824 | NA | coding | upstream | 236280 | 31658248 ~ 31674496 (-) |
| AMCG00016831 | NA | coding | upstream | 333567 | 31755535 ~ 31762700 (-) |
| AMCG00016833 | NA | coding | upstream | 355444 | 31777412 ~ 31801252 (-) |
| AMCG00016835 | NA | coding | upstream | 381069 | 31803037 ~ 31818127 (-) |
| G15927 | NA | non-coding | downstream | 41295 | 31370080 ~ 31379449 (-) |
| G15890 | NA | non-coding | downstream | 244142 | 31172185 ~ 31176602 (-) |
| G15864 | NA | non-coding | downstream | 313952 | 31103379 ~ 31106792 (-) |
| G15854 | NA | non-coding | downstream | 387424 | 31033070 ~ 31033320 (-) |
| G15845 | NA | non-coding | downstream | 418616 | 30998634 ~ 31002128 (-) |
| G15962 | NA | non-coding | upstream | 54875 | 31476843 ~ 31481401 (-) |
| G15976 | NA | non-coding | upstream | 67293 | 31489261 ~ 31489836 (-) |
| G15982 | NA | non-coding | upstream | 82111 | 31504079 ~ 31504548 (-) |
| G15985 | NA | non-coding | upstream | 106082 | 31528050 ~ 31528621 (-) |
| G16004 | NA | non-coding | upstream | 182638 | 31604606 ~ 31615213 (-) |
| AMCG00016815 | NA | other | downstream | 32476 | 31380547 ~ 31388268 (-) |
| G15787 | NA | other | downstream | 891244 | 30526292 ~ 30529500 (-) |
| G15706 | NA | other | downstream | 1218393 | 30201459 ~ 30202351 (-) |
| AMCG00016740 | ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 | other | downstream | 2195157 | 29201872 ~ 29225587 (-) |
| AMCG00016732 | NA | other | downstream | 2635237 | 28781472 ~ 28785507 (-) |
| AMCG00016847 | NA | other | upstream | 839581 | 32261549 ~ 32267968 (-) |
| G16247 | NA | other | upstream | 1001090 | 32423058 ~ 32423438 (-) |
| AMCG00016859 | NA | other | upstream | 1075539 | 32497507 ~ 32507319 (-) |
| G16356 | fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 | other | upstream | 1754108 | 33176076 ~ 33178883 (-) |
| AMCG00016889 | LOC107570748,LOC106906011 | other | upstream | 1969821 | 33391789 ~ 33434651 (-) |
