G15961


Basic Information

Item Value
gene id G15961
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31475307 ~ 31476218 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU19814
GACCGTTCTGATGCtggttggttgtttttctcAGAGCAGGCTATATGTGTGTACATACCGtatacacacaccaacacactcGCATTACAGTATACAATGGATTCCTTTTTCAATCCAGAATCAGATCCTTCTGTTTCCCCAACCccaatttactttttatttttgttagtttgtgtcTTTGTTCTCTCCTGTATCTGTGAATTAACTTTGAATTCTGTCTGTAACAACAGCCACGTGTTTCTGCccactgtgagtgtgtgtgtgtatgtgtgagtgtacaAGGAAATATTAAGATCTCTTTTTGACATCTGCAAAACTCATTCATCAGCATGACAATGGTCAACTAACCAGGGAATAGGCACATCTGAGAACTTGGAACCAACTCCTTTTATAGTGTCCCCAGTGAAGTTCTCATGATATTTAACACAATCGCAAACAGAACATATGTAAAACACTAATGCACAGCTGAAGGTAAACACTGACATGTTGCAAAAACAAGCTTTTTCTTTGCTATTCGAACAGATGCAGACTGTTGCCAGGGGATACCCATTTAAGCACTTGaaattaatgtctaaaaatgtttttttccacgGAGCAGTAAATAGGACACTGGAACCTGATGCTTTTAATGCAAGAGGCTGTCAGTTTAGATTTCAAATGAAACttcaacttaatttaaaaaccttatttttttaatcaacggCACCTGGAGCCCCCGTTCTGTCCCCAAGATGGACTAGAACTCGTTCACAAAATCTCGGCATTGAAGCTTCTACTGAACTATTTTGTCtactgtatatgtacagtacaatgAAAAGTGATAGAGTAACTGACCTTTTCTATTTGGCTTCTAGTGCAGTATTGTGGTAAATCCTTTGTGAGTGTATGAATGTCCCAGTATCCCTTCAAACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19814 True 912 lncRNA 0.42 1 31475307 31476218

Neighbor

gene id symbol gene type direction distance location
AMCG00016819 znf652,LOC108258819 coding upstream 7848 31447119 ~ 31467459 (+)
AMCG00016813 phb,LOC107661032 coding upstream 54331 31417981 ~ 31420976 (+)
AMCG00016814 NA coding upstream 63254 31393171 ~ 31412053 (+)
AMCG00016809 NA coding upstream 104958 31363835 ~ 31370349 (+)
AMCG00016810 LOC105013316,LOC108413532,LOC106607262 coding upstream 124131 31344014 ~ 31351176 (+)
AMCG00016817 NA coding downstream 17034 31493252 ~ 31503016 (+)
AMCG00016818 eftud2,LOC102798265 coding downstream 31333 31507551 ~ 31523662 (+)
AMCG00016826 NA coding downstream 90684 31566902 ~ 31569427 (+)
AMCG00016822 NA coding downstream 103924 31580142 ~ 31591537 (+)
AMCG00016821 NA coding downstream 135399 31611617 ~ 31634762 (+)
G15853 NA non-coding upstream 441986 31033069 ~ 31033321 (+)
G15847 psmc5,LOC107745657,LOC107684752 non-coding upstream 468301 31005897 ~ 31007006 (+)
G15817 NA non-coding upstream 568468 30905610 ~ 30906839 (+)
G15730 NA non-coding upstream 1043513 30429053 ~ 30431794 (+)
G15651 NA non-coding upstream 1259597 30213172 ~ 30215710 (+)
G15966 NA non-coding downstream 27861 31504079 ~ 31504552 (+)
G15995 NA non-coding downstream 139002 31615220 ~ 31644515 (+)
G16037 NA non-coding downstream 278824 31755042 ~ 31755427 (+)
G16169 NA non-coding downstream 785493 32261711 ~ 32262672 (+)
G16211 NA non-coding downstream 962036 32438254 ~ 32442585 (+)
G15855 LOC105013322 other upstream 414162 31059340 ~ 31061145 (+)
G15659 NA other upstream 1238466 30236454 ~ 30236841 (+)
AMCG00016770 rpl27,LOC106601555,LOC107551168 other upstream 1362023 30109599 ~ 30113284 (+)
AMCG00016769 NA other upstream 1367580 30022607 ~ 30107727 (+)
AMCG00016772 g6pc other upstream 1391779 30072938 ~ 30083528 (+)
AMCG00016829 NA other downstream 225451 31701669 ~ 31731446 (+)
AMCG00016830 NA other downstream 252338 31728556 ~ 31751113 (+)
AMCG00016841 NA other downstream 775590 32251808 ~ 32260627 (+)
AMCG00016854 NA other downstream 1022838 32499056 ~ 32503372 (+)
G16289 NA other downstream 1380143 32856361 ~ 32857440 (+)

Expression


Co-expression Network