G15962


Basic Information

Item Value
gene id G15962
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31476843 ~ 31481401 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU19815
AAGATATATAatgaatttattaaatgaaatgcagtggatatataaaacaacaaacccaCCTTAGCCCACAATCTTCCTGGCTACAAGaatgtgaaaatgatgtgaaggTAACTGGGAACCATTTCGACTTACACAGAAATATCACAGAAATAGCTGGTCAACATTCAACCGCTTTAGCTCCTGACCTATACAATCCTGATCAATTAATTGAGACAACTAGAACACACAGCTTACTGTTCCATACAGAATGTCTGGCCGAAGTTAATCTCCAAGTGGAAGAAACACAAGAGCAGCACAATCTCCTGCACATGTCGGGGGCTGCCCTGTCAGTTTTGACCTGACCCCTTTTCTGTATCTGGATTGACACTTTGTGCTAAGCAGCCATCTTGTTAAATCAAGCAGTTCGAGAGAGAGAATTGACAGTTCTATTCCACAGCTTGAGATTTTTcctagggaaaaaaaaaaaaaaaaaaaaaaaaaaaactgaaccaacctgcccccccgcccaaaaaaaccaaaaaaaaacaggtcttCTAATTCACACAATGACTTCAGCAAAGGAAACCAACGTTCCACAACCATTGGAATGCATCAGTGACaatcttgcacacacacacgcacgaaGACACAGGAAACATGGCTGGAGCTTGGATGAGGTTAGCAGCGATTTGTCCTGCCATGGAAGAGTTGGGTGGTAGTCCAGCAGCAAAAACCCTCCCTTACAGACAACTGGCAATTAAAAAGCAGTAGAAAACATCTGTAGtggcacacaaacagacagtgATAACCGATTACATTTCGGCAACACTCCACTTTAAAGCCTGCCCTGTCAGCAGTTCTGCAGTGCGACCAGAATGGAAACCCGGCcagctttaaaaatgcatacaaacatgGGGCATGATATAAAAACATACGGAAGAACAACTTCAAGAGAGTAAATCAGCCCTGTTTCCTAGTACACCCATGAATTCTGTActtgtattctttaaaataaaggctTTTCCTAATAAAACTATGTCACTTTTTTCTGTGAGAAATAATTTAGTGTAAAtggtactgtatatattttatatataaaaaacacatacacaaacaatacaaatactggATTTGATCCTGTCAGTTGCCTTTCTGACCCACACACTGATTGTTTCAAGTAGGTCGCAGACAGTATTTGAAACCGTGAAGGACTGGCTTAGTCTATAACAATCCACGCAGACCTGGTAAAAAAGTATGTGGCACCAGCACTGTGTCTAAAGGGGTCAAGATTAGGAATAGCAAAACAACCTCATTGCCTCCAACCAGTTATAACCTTCTTGCTCCatcaaaaaaaaagaaaaataagaaatcaataacaagGCAAGAGTGACTTGAGCCCAAGGGGtgggatttagttttttctggcATAGTTAGAGCAAAACAGGCCTGCTAAAGTGGTGAGTTGAAACAGTCTGCAAAAATGATCTTTTCCTTAGAGGTCCGACCACCTGTAGTTTTAGAGTGGGTTTAAGCATAAACCAGTACAGAGTATTCTCCATTTGTCAGATATCTGATGTGGCTTTCCTGTATACCTGGCATCTATTAACCAAGGGCAGCAATTTGGACACCACTCCCACCGTAATTCAAAGCCCACCCCTCTGCCACTGAGTCGGAGTCGTGTTTTCCAGCTGCCCATAACATGCACTATTTGTCAGGCTAGCAATCACTCCCACATTCTAACATAAAAACAGCTATTAAGAGACATCCAAAGACGGACAATGTAATTAACCTCCTGATACAGAAGAAAGGGATTTTTCAAAATCTGTTTATGATGTCTGTTATCTTGTTAACCCGTTTTCTGcgttgatttatttaattttcaccaCCGTTGCTGCTTGAGGTTGTTTCTGGTTATTTGCAaggctaaataaaatattacagcaaatcacgtgaggggaaaaaaaaaaatgcattgaagctTGCTTCCAGGAAGTGTACGCGGGTAAGTAAATAAGCGGTGCACCAATGGTAACTCCAATGGTGAATACTCtgcattttacccaaacacaacAGTCAGATGCATCCCCACTGCATTTCTATGCCAGGTGTTAACAGAAGCTAAAACTTTTGTCGGAACGCGACTGAGAATAGTCAAGGCAGGAACGGATACTTCAGAAGACGTAATAGGAAAACACAAGAGCTAAGGAACACCTGGAAAGTGCcaatataaacttttttttttttaaacataattgcTAAAATCGCTAAGCTTAAAAGCAACTAGGTGTACTTTAAAAGGTGAGAAAAAGTGCTACGCTTGGTTTTAAGTTTATGCCGCCTTTCACTGGGAGCAGCCTGATCAGCTGACAATTACTGAAAACACAGGAGAAGGCAAGGAATTCATTCAGAGATTTCCCCATTCCCCCCACACTGGTCCTGTCGTCGACCTGCAGCAATAACAGCCGATGTAAAGGGAGAGATCTCCAACAGAAAACAGTCTAATTCATTTCCTGGAAATCCTttccactactccacactgagCTCCTGTCCTGAGGTATTGCAGAGAGAAATAGAGGGGATAGTGCTATCATGGGTCTGTTTTATTAACACAGATACAGATCGCTGGGAATTTCTAGTTTTGAGGGAGGGATTTTAGGAAAGGGCACCAAGGGATATTTTAAGTGCCACAAATATGCATCTCTCAAGTTATGGGAAAGTTGAGATTCACCTGCCGTGGAGCAGAATTATCAGGATTTTCCCAGAATTCCTTGCCCACCCCTTTAGTGGACACCAAACAGCTCAATAGGGCAGGGATAAACCACAATCAGAGGAATTCTCCACACGCAGGCCTCATCACTACCCTCCTCCACAAGAATTTAGAACAAGCAGACTTGGGAATTACTTAACTGGTGTCATAAAAACAAGAGATTGGCAACATAATGACCTAGCCTGCCTGCCTCTCTTGCAACAGACTCTGTGCAAGTGGTACTCAAATACAAACTCCTGAGCAAATCAGATACAGGGGATGACAAACACAATGATGTCAGCTGTGTAACAGTGCAGGGTGAAGGTCTGAAAAACATTtcatcaaaataacaaaaacaaaaaacaaatggattataatttgcttttcttaaatCTGTTATACAATTTAGGACCAGCTACACAGAGGAGGAAAAAGACACcgcttcttaaaataaatttcacttaaaaaacaatGCTAGTAAATAGgtctatacaaaaaaaactaaattaattttgtagatAAAAGTAGAGTGCGTTAGATAGCTACATAAAACCAATACATTGCTTTTCTTATAAAGCTCCATAAGTACAAAGCGCAGCTAAGTGATTGCAGTCTTAGCTGTTTATtcaacagtttttttcttttcttttttttttataaaatattttagttattttaaaaatgtttttttgtttttttttaatgatacacAGTGATACACTTAATGCTTAAGTCCAGTCTTTGCACATTCAAAAGAGCTTTTTAAAACTGGTAAACGAGTTATCCTAATATCCACACAAAAGggatatgagagagagagggagaggacagATTGAGAGGGTGAAAAGCATAACTCATTTGCAGATATGaaattggaagaaaataaattggtcttgagaaaaaaataaaacaaatggagaTTGTTGCATTCAATTTTTGTCCTATTCTGGTATTTAATGCTGTTCTTCTTGAGTAGAGGCAGATGTTgaacgaaagaaagaaaaaaactgggTAAGATGTTAGAAGTCCTCTCCATCTTTACAGTTTAATGCTAGTATCAAAAATATCACTTTCTGTAACAAATAGCCAGcctgtgtttgcgtgtgtgtgtgcatgcgtgcgtgcgtgtgcgcaCATGTGAGTTGCAAGATACAAGAAAACCATCATAAACTAACCAGGGCATTGGCAATACACTCAATGGGTTGGGTTGTCTGCTTGAAACTCAGAAAATATCTCCCCCGGCCCCCAATTCACTTTACACAGTAATCAGACAGGTTAATATAttaatgagtttaaaaaaaaaaaaaaaaaaaaaaagaaaaagaaaagaaataggTAGTTAGGCTTAATTGGTTTTATATGGACTTTTTGCTGAGGGAGTCTGTGGGCTCAGTGTGAGGTGTCAGTCATACTGCAGCACTTTCAGTGGTGCAGCCTATCAGTCAATCCCATTTGATAACAGTcgacttaaaaacaaaacaaatgtaacatatttagcgattaaatatttcagtgaaCAGCAATCTAGTGATGCAATTATATAACAGCATGCTATTTGTAGATCCTTACATAGATCATAAGCTCTTACAACAGTGAAAATCTATAGGGCAACACCAGCTGCTACTGTGCCTATGCCGAGGGTACGGTTACTGTTACACGCTTTTTGAATCCATTTGCTTTCATCTGAGTTGCTTTATTGTCTTGACTGCTGTGGGGACATGAAGATCTAAGGACAACCACACGGCCCAAAGTATTCACTACCAAACGATTCGGGTAACTGGCACACTACATCACTGCTAAAGAGGGTACAACTAATTAGTGTAAATTGACAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19815 True 4559 lncRNA 0.38 1 31476843 31481401

Neighbor

gene id symbol gene type direction distance location
AMCG00016816 NA coding downstream 72899 31400817 ~ 31403944 (-)
AMCG00016811 NA coding downstream 139563 31336445 ~ 31337280 (-)
AMCG00016812 NA coding downstream 161455 31292282 ~ 31315388 (-)
AMCG00016807 becn1,LOC102786760 coding downstream 293542 31177556 ~ 31183301 (-)
AMCG00016802 LOC105013322 coding downstream 416157 31060351 ~ 31060686 (-)
AMCG00016823 nmt1,LOC102778525 coding upstream 162455 31643856 ~ 31653933 (-)
AMCG00016824 NA coding upstream 176847 31658248 ~ 31674496 (-)
AMCG00016831 NA coding upstream 274134 31755535 ~ 31762700 (-)
AMCG00016833 NA coding upstream 296011 31777412 ~ 31801252 (-)
AMCG00016835 NA coding upstream 321636 31803037 ~ 31818127 (-)
G15947 phb,LOC107661032 non-coding downstream 54875 31420744 ~ 31421968 (-)
G15927 NA non-coding downstream 97394 31370080 ~ 31379449 (-)
G15890 NA non-coding downstream 300241 31172185 ~ 31176602 (-)
G15864 NA non-coding downstream 370051 31103379 ~ 31106792 (-)
G15854 NA non-coding downstream 443523 31033070 ~ 31033320 (-)
G15976 NA non-coding upstream 7860 31489261 ~ 31489836 (-)
G15982 NA non-coding upstream 22678 31504079 ~ 31504548 (-)
G15985 NA non-coding upstream 46649 31528050 ~ 31528621 (-)
G16004 NA non-coding upstream 123205 31604606 ~ 31615213 (-)
G16024 NA non-coding upstream 212415 31693816 ~ 31697608 (-)
AMCG00016815 NA other downstream 88575 31380547 ~ 31388268 (-)
G15787 NA other downstream 947343 30526292 ~ 30529500 (-)
G15706 NA other downstream 1274492 30201459 ~ 30202351 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other downstream 2251256 29201872 ~ 29225587 (-)
AMCG00016732 NA other downstream 2691336 28781472 ~ 28785507 (-)
AMCG00016847 NA other upstream 780148 32261549 ~ 32267968 (-)
G16247 NA other upstream 941657 32423058 ~ 32423438 (-)
AMCG00016859 NA other upstream 1016106 32497507 ~ 32507319 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other upstream 1694675 33176076 ~ 33178883 (-)
AMCG00016889 LOC107570748,LOC106906011 other upstream 1910388 33391789 ~ 33434651 (-)

Expression


Co-expression Network