G16069


Basic Information

Item Value
gene id G16069
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31769730 ~ 31771274 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU19968
TCAAACTGGTGCAGGAAGCCAGTGGGGCGGCAGTAGCGGTGCCTGCAGACAACCACCAGAGCTACAAAGGAGGCCAGGAAAATGGTAGCCAATACGCCGATGGCCACAATGACAACTGTCTCCATGGCAGCCCACTGTGTCTCCAGCGTGGACGTTTCAGCAACAAGGTGACTAAATTGGTTCAGTTTGCTACAGGAACGTTTTCATAGTGTGGATTTTGTCTTCATATCCCGTTGAAGATATTTCTTCATCTGCTTTGGTTTTCAAATCGTCAGGCTGTGGCCAAATACACTTTCTCTGTGATAAATCAAGTCCAaagttCTTTAAGAACAAGTTGCTGATTGTTTTCAGActcttttatttcccccctccccT
>TU19969
TCAAACTGGTGCAGGAAGCCAGTGGGGCGGCAGTAGCGGTGCCTGCAGACAACCACCAGAGCTACAAAGGAGGCCAGGAAAATGGTAGCCAATACGCCGATGGCCACAATGACAACTGTCTCCATGGCAGCCCACTGTGTCTCCAGCGTGGACGTTTCAGCAACAAGGTGACTAAATTGGTTCAGTTTGCTACAGGAACGTTTTCATAGTGTGGATTTTGTCTTCATATCCCGTTGAAGATATTTCTTCATCTGCTTTGGTTTTCAAATCGTCAGGCTGTGGCCAAATACACTTTCTCTGTGATAAATCAAGTCCAaagttctgaaatgaaaaaccaggccattgtggCAAATGTTGACTCACACCCAATGCATACAGAATGTGCGCTAATATTTATAGAGGTAAAGTACTACAGTAATGGAGTACTAGAGAAGCCactttgtgttttcaaaatgttgaatAAGAATAAGCCTGTGCCAAAC

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG:

id description
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU19968 False 375 lncRNA 0.47 3 31769730 31771274
TU19969 True 482 lncRNA 0.44 2 31770675 31771274

Neighbor

gene id symbol gene type direction distance location
AMCG00016831 NA coding downstream 7030 31755535 ~ 31762700 (-)
AMCG00016824 NA coding downstream 95234 31658248 ~ 31674496 (-)
AMCG00016823 nmt1,LOC102778525 coding downstream 115797 31643856 ~ 31653933 (-)
AMCG00016816 NA coding downstream 365786 31400817 ~ 31403944 (-)
AMCG00016811 NA coding downstream 432450 31336445 ~ 31337280 (-)
AMCG00016833 NA coding upstream 6138 31777412 ~ 31801252 (-)
AMCG00016835 NA coding upstream 31763 31803037 ~ 31818127 (-)
AMCG00016834 NA coding upstream 68557 31839831 ~ 31844052 (-)
AMCG00016838 NA coding upstream 73188 31844462 ~ 31852119 (-)
AMCG00016837 LOC106607518,LOC104946854,LOC106600796,LOC102209712,LOC101480582 coding upstream 207937 31979211 ~ 32002535 (-)
G16043 NA non-coding downstream 49694 31718900 ~ 31720036 (-)
G16026 NA non-coding downstream 70330 31699136 ~ 31699400 (-)
G16024 NA non-coding downstream 72122 31693816 ~ 31697608 (-)
G16004 NA non-coding downstream 154517 31604606 ~ 31615213 (-)
G15985 NA non-coding downstream 241109 31528050 ~ 31528621 (-)
G16154 NA non-coding upstream 434449 32205723 ~ 32206877 (-)
G16153 NA non-coding upstream 435688 32206962 ~ 32208117 (-)
G16244 NA non-coding upstream 621868 32393142 ~ 32393380 (-)
G16245 NA non-coding upstream 644917 32416191 ~ 32416444 (-)
G16248 NA non-coding upstream 654442 32425716 ~ 32425956 (-)
AMCG00016815 NA other downstream 381462 31380547 ~ 31388268 (-)
G15787 NA other downstream 1240230 30526292 ~ 30529500 (-)
G15706 NA other downstream 1567379 30201459 ~ 30202351 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other downstream 2544143 29201872 ~ 29225587 (-)
AMCG00016732 NA other downstream 2984223 28781472 ~ 28785507 (-)
AMCG00016847 NA other upstream 490275 32261549 ~ 32267968 (-)
G16247 NA other upstream 651784 32423058 ~ 32423438 (-)
AMCG00016859 NA other upstream 726233 32497507 ~ 32507319 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other upstream 1404802 33176076 ~ 33178883 (-)
AMCG00016889 LOC107570748,LOC106906011 other upstream 1620515 33391789 ~ 33434651 (-)

Expression


Co-expression Network