G16211


Basic Information

Item Value
gene id G16211
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32438254 ~ 32442585 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU20144
tcttttaatgaataCAAGAGTTTTACAAATAAGTTACAGTAAACCACAGTTACGTTACAAATGTTTTGCATCACGTCAGTCTGCAATTGCAAATGGTGTTTGCCTGACACAATAATGTGAATTAAACCAGGCTCTGAACGGCACGTCCGAGGAGGGCTAATGTATGGCAGCAACATACTGTTACAAGCGCTTGTTTCACAGACAGGTTAGCTTGGGCGAAGCGTTTCCTTTGTGCCACAGACGCGTTACACAAGGCATTCATTACTTTTCCTTTTGCAAGAGCAGTAACGCACTAATTGCCAGTAATATCTCTCAGTCGTAGGCAGAAGCACTAACTACAGGAAGTGATTTATACATTGTTTCCAGCTTTCGGTTATATAGTGCTTTTATCGTTATTAGCttatatttcataaaataatgacCAGGAGGCTGGATTTCACCACTGAGCCAAAAGCAACAGTCCTTCAGAACATCAAAATTATCCTTTCATGTGGTTTCAGAAATAATTCCCCTGTTCCATGTTGATTGGTGAGCTGTAATGAAACGGTAACAGGCTATGAAAATTAAAGCCCATCAAAAAAATAATCCTGATATTGTCGGCTGCTGAATTGAAGATCTTGAGAAATGCAAGTAATGCGCCATGcttataaaataacaatgataaaagtttaaaaagggATGTATTAATGGCTCCCAAATATCTCCAATTGTGTAAATAatgatcataaaataaaaatatcacttTAACCTATTTCAATTGAATATAGCCATTCCCATATCTGCTTACTAAACATTTACCCCTTCTTGGATTTCTCGTGATCATAGCAGGCTTGTAGTTCTGACataggcaaaaaataaaaccaaaatctacaaatgacagaaaaagGTTTCTTTAGCTCAGAACATCTAAAACAGATACCCAACTCAGATCAGTTTCACTTTTGTGGAAAACCccttgtggttttgtttttgtgatataTCAGATAGGCTTCGACTTAGTCATTTTATGATGGTGGTccatgtatataaattaaacatactgATATGAATATACAGTACTTTTTTCTCCATACCGTGTGTTATCCAATAACTTAAGATCAATTCTAATGGTCAATTTGTAATAacttctttaaataataatttgtaacgTAAAACACACTAAAATACCTTTAGatactatatacatttaatatgtaaCAGCCAagggtgTCCCAGtgggggggcctgtctgtgtggagtttgcatgttctctgTGCCTGCCTGGGTTTTGTCtgggcactccagtttcctcccaccatccaaagacatgtgggttaggttaattggtctctctaaattgccgtgtgtgtgttgcccagcaatggactggcatcctgtgctgggtgtattcctgccttgtgccctatgcctgccaggattggctctggcttccctgcaaccctcaccaggataagcagctttgaaaatggatggttgcAACAGCTTATTTATAACTGCTTGTTATCTTCGACTTGAAGCTAAATTGTAACAGCAGTTTCACGGTCTTCAAACACAGAGTGCCCACAGTAAACTGGGGGTGTCATATTTAAGATATACGGCAAGATACTTTGgccaaaagaaaatacatggtatacagaatatattattaggATACAAGTCGGAGATAATTTTGTTCATAGAAGAATGgactaaaaatatacattaatctAAACTAGATATACACCTTCAATAGTCGTTTATACTTGGGGCTTTTGCTTTTAAGGATGTAATTCCAGACACATTGACATCAATCCATTATCCATTTGATTAAAAAGGAATTAGTTGATTGCGGAATCGAAATTTCATGACATTAAAAACAGGTACTAAAAACCCAACGAACtctcctgcttttctttttttgtcaaaaGTTACTATTTTGGCCACTTCATTTGAAAGGGAATACTTCAGTACTTTCGAAGTTACTCTACTATTTGTTCACACAGGAAGTCAATGGGAGGCTCCTACACTAAGATGATGATggtaatattatttatataaatcataataatacaactatttGGAAAACTGTCACCTGCCTCACAGAGATAAtttgccatgtttttatttgtatatatttatatagatgtatttattaacacagaaaataaagctacaATTAAGTGCCTAgagaatttatttttcccttgtATTTTAGGGAAGAAACTAGAAACACAGATAAGTAAAGGGCAGGTGATCTTATTCAGTCCAGATCTTCTGTATGAACATACTTTTTTGTCTCTGTAGGAGGAGGGGAGAAGTATCTTTCTCACTCAACTGAAACAGTTTAGTCATTTGAAGAGAAGTAGTTACAGAGATTGATACTGTTTGATGCATTGAGTAAAACCATTAAGCTGTGATTAGCAGAACAAACAGAATAGAGACCATCCTTCTGACTCTCCACAGGACCTGCTATGTGCCCGAGGCTGGATCGGTTCCCCTTTAGCGGTTTTATGTTCAGctttctaattaaatcaatttagaaATAAGAAGAAGGTATCTGAGCTGAACATTCAGGTGAAATTGAACAAccatgatttgtatttaatataattcagaTTTGCATAATAATAAGTTTGTATTGTCGAAGACGTGTGGAGGAGGTTCTCAAAGGAAATCTGGCAAGAGGTGGCACTTAACTTATAGTCggacaaaaagttaaaaaatattaacaaactgtagaaaacaataacatacatGATCCACACAAATGCCATTTAACTACATGTGCTGCagttactgtactgtgctgtattttcttttctttttccactaGTCTAACTTTTGCATTATGCCACTTTTgagtttccaaaaataaaaccagtttttTAACTGCAAGTcactaataattgtattatgataataataataaacaagtgcaAAAGGCATTGAAAGTCAGCCATTCTGGTGAAAGGTAAAGTGAAAGAGACCATAGCGATCGTGGCTGCACTGCTGTCTGTATATTGGTGCTGTAGTCCCTCACAGGCAAGGTAGAGGGCTCAGTCCTGTGTTTCTTTCTGGTGCAGCAGTAACGTACCACAGGGAGGCCAACAATAGACCGGGAACAGCAGGGACTCCTAGACATACAGGCACCATGCGTGAGTGTTGAAGGTCCAGCTCTACTCTGGATCAgtcataattaaacaaaagcacacattcattttgtcggttttaaaatgtttgctttgcaGGAAATCTATTACATGTTTTTGCAAACCCACTGAGGCAAGCAGCTGCAACATTAGCAACACAGAAAAGCTGCCCAGCACTATATTTCCTCCCAGCGAGAAGTGTTTCAAAAAGCTTAAGCAGACCTCTGATTCTACCGTACCAGGAGACACTGTCCCTGCATCTGCAGTCtgatttctgaagaaaagaaacgTTACATTGGAATAAGAGGTTGTGTGCCTTCATGGATACAAAAAGCAATAAGTACAATAAAGCTAGTCTGGCTGAAGGATTGCTGTAGTTTGCTCTGCTGTGAAAGACTCAGGTGAGAGATTGGAAGGGATTTTCTCCTGTTGAACGAGAGCCAATTGTACAAAGGGTTTGTTTTCAAACAGGTGaaacgggggggggggcggctcagatacagagacacagctGATGTTGTGAAGCCCAGCAGATGTAGCCCGTTGTGAAATGACACTTAGATTTCAGCTGCTTTTGCCAATAGTAAgtagaaaaaaattaaacagcCTTCCAAGAATGAATGCAGCAACTTTAGCTAGTGCTGGAGTTGATGAAGAGGAGGGGTAGAGAGCTCCAGTTACACACAGGGCCACATTTGTCTCTGGTTTTCATGCCATCTCCCATCTTAATTGTGGAGAGATCGCTCAGCTATCTGACTCCCTTACCAATTCAAAGGCGCCAGCAGAGCCTTAAGCAAATCAGCCCTATGGTTTGGAGTTGCCTACCCCCGCTCTGGACCTTCATGGTAAGTGCACCGTGTCTGGGAGTCTAGGACTGTCCACCCAGAGAAGTGCCTGGTGCTGTTACATAGCCCAGCGATGTGATGATAATGGTACAGGGCTACGGGAACGGGCAGAGACTGTTACCCGAGTCCTTCATTTGTGGGCAAACCCCAACAACAGAGCAACGCATCCGATGCCCCAGCGCTGACAAGGACAACATCACTGACAGAGCAGAAGGAGAGGGGCGCAGGTGAGGTACCCCAGGTCACCATGGCTACATGACGTCTATCTCCCTCTCAATCCCGACGTACTTCAGTGCGTCCGCTTGGCTGTATCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20144 True 4288 lncRNA 0.40 2 32438254 32442585

Neighbor

gene id symbol gene type direction distance location
AMCG00016851 NA coding upstream 4116 32393881 ~ 32434138 (+)
AMCG00016848 tubg1,LOC106601139,LOC107721485 coding upstream 134785 32284756 ~ 32303469 (+)
AMCG00016843 NA coding upstream 192719 32225792 ~ 32245535 (+)
AMCG00016840 NA coding upstream 221931 32210141 ~ 32216323 (+)
AMCG00016839 naglu coding upstream 231380 32198948 ~ 32206874 (+)
AMCG00016852 NA coding downstream 38079 32480664 ~ 32481807 (+)
AMCG00016853 NA coding downstream 47328 32489913 ~ 32495747 (+)
AMCG00016855 NA coding downstream 55297 32497882 ~ 32498508 (+)
AMCG00016861 NA coding downstream 148182 32590767 ~ 32607382 (+)
AMCG00016863 NA coding downstream 330490 32773075 ~ 32777472 (+)
G16169 NA non-coding upstream 175582 32261711 ~ 32262672 (+)
G16037 NA non-coding upstream 682827 31755042 ~ 31755427 (+)
G15995 NA non-coding upstream 793739 31615220 ~ 31644515 (+)
G15966 NA non-coding upstream 933702 31504079 ~ 31504552 (+)
G15961 NA non-coding upstream 962036 31475307 ~ 31476218 (+)
G16290 NA non-coding downstream 414966 32857551 ~ 32859016 (+)
G16323 NA non-coding downstream 539194 32981779 ~ 32982330 (+)
G16350 NA non-coding downstream 737120 33179705 ~ 33179940 (+)
G16351 NA non-coding downstream 737654 33180239 ~ 33180439 (+)
G16395 NA non-coding downstream 882509 33325094 ~ 33328342 (+)
AMCG00016841 NA other upstream 177627 32251808 ~ 32260627 (+)
AMCG00016830 NA other upstream 687141 31728556 ~ 31751113 (+)
AMCG00016829 NA other upstream 706808 31701669 ~ 31731446 (+)
AMCG00016820 NA other upstream 945150 31473706 ~ 31493104 (+)
G15855 LOC105013322 other upstream 1377109 31059340 ~ 31061145 (+)
AMCG00016854 NA other downstream 56471 32499056 ~ 32503372 (+)
G16289 NA other downstream 413776 32856361 ~ 32857440 (+)
AMCG00016880 dcaf7,LOC100702343,LOC105030232,LOC105898766 other downstream 877559 33320144 ~ 33333746 (+)
AMCG00016898 NA other downstream 1187427 33630012 ~ 33650080 (+)
AMCG00016901 NA other downstream 1226008 33668593 ~ 33674361 (+)

Expression


Co-expression Network