G16292


Basic Information

Item Value
gene id G16292
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32854781 ~ 32857465 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU20246
gtgattttccaaataaataaataatcatcattatgAAAAAGAACTAATTCTTCAATACGAGATAAAAAAacgagataaaaaaagaaagaaaattcaAGTATGCAGTTTGTGAATGTCCCCCTTTTTCTCCCTGTTGATTTTTCAAAGCAGGTTGCCCATGACgtattgaacaaaacaaacaaaacaaaacaaaaaatcaaaaacaaaagccaacCAAAAatcaacaaaccaaaaaaagtatatatatttatatacctaaaattataaatattcagTTGTTTTTCTAAGTACAAGTTTGACATAAGTAAAACGGtctttttgttacatttacagtataGAACATAGCAATCTCTTACAGTATAGAACAGCAATCTCTTTAAGAGCACGCTTGAAAGCAGAGAAAAATCTATGGACAACTGTTTACCACAGGCGTGACAGGAAATGAGTCCAGGCTTCACACAGATAGCATCTTTACTGGGTGACTCCCCAAATACTGGAACGCAATGGGGGAAAGAGATTAATAACTGATCAGCGACCATAATATCGACACTCACTGGCCCAATCGCTTCACTTTAACATGTGAAGATGTTGCAGAAACAGATTTGATTATAGCCATCCCTTAAGTTAGATGATTTTAAAGTCTGCAGTGATTAATGGGGTTTCTTTATTTACTCCTGAACTGAGTTACTCCACCCCCCCCTTTGAAAAAGAAACTCTTTTTGAGTAGACATATTCTAAAAGGTCTCTGCATGCGGAACTTGCTTGCTTTTACAAACTTTGCTTTGTTTGCTTAAAACTGCACTGCGATAAAAATGAAAACGAGCTACGGTCTCTGTTCAGTTGACACTTTgagggcaggggggtgggggggcgaaCGAAGGCTGCAGACATCCCCCGGGGCTGCGGGTACACAGAGTGCGACTGCTGCATCCCCACATTGCAGGAGTGTGTGCAAGTCCAGttgttgttcatgtttttgCCCCCAGGGCTTGTTTTGTGAAGTATTGTCACAGCGAACATTAACACTCATGTGCTCTGGACAGATCTACATTTCTCCTCCCAGGAGTCCCACTCACTAACCAGGAGACCTGAAGCCTGTCTCTGCTGCCACCTGCCTCCacccctcctccccacccccaccccacccaagCTCCACCCAGATATCTACACATTCGACTCCACAAATGGTCTCTTTGGTTTAATAGGCGACGTCTGTCCCTGCCGGGAGTCCCGGGAGAGCTGTCTGTACATGCTGTCCTGGTAGGCCTGGGCAACGGGCAGTGTCCGCGCCACCTTGACATCTGGGTATGTGGGTACCTGGCTGACCCTCTCTAAGATGTCCCCACCTCCACCGCCCCCCACCCGGGAGCCGTTGGCCAGTTTGGACAGGGAGGGCTGTGGGGGCTGGGTGTAGTACTCATCGTCGAGCAGGTGGCCGTTCTGGGCGTTGTTGGTCTTGTTGTAGTAGGCGATGTTACccagggaggtgggggggctgtAGGAGGAGCCGCTGCCCCCGCCACCCACCTGCTGAATCAGATTGCCGGGGGAGGTGGGGCTGGTGATGACCGTGTCCAGGGAGGACACGGCCCAGGGCCGGGACGGCTGGTGGAGGTACTGCTGAGTCCGTGCCGTCTTGTCGATGATGCCCATGAAGGGGGTGGTCCGGGAGCGGGAGGTCTCTACCTGGTACACCCCGCCGCCCCTGCCGTCACCCCCACCGCCACCTTGCGAGGGGGACACGGGTGAGAGGTCGTCGCCGGAGCGCTCGTAGGATGGCTTCAGGGGGATCTCCATCTGCTGGATGGATGCTGAGGGCCGGAAGCCTGGGGCTAGGTTGCAGGCGGAGCCGGAGGACAGGCTGTTGCTGGATGGGGAGAAGCGCAGGCCCACGCTCTGGGAATGGATCAGGGGCCGAGGGGTCGGAGGGTGGGGCTTGATCTCAGAGGGGTTGGCGCTGACTGGCCGCCGTACTAAGTGGGGGATTTCTGGGGAGCCCAGCTGGCACTGGGGCAGGCCCACGGCACGCTCTAGCTCGTGTTTGGACACGGGGTAGTAGGCGGCCGATTGGCTGCGGCTGATCTGCGGGGTCTGGCCATAGCGCATCCCCCCGgggccccctcccccacctccaccacTGCCACGGTACGCTGAGGAAGGCCGCTGGGGGAGCTCCTCCTTCACCAGTCCTGAATCTACTCCCCCACCACGCCCGCCATGCTGGCAGATGGCCCCAGCGCTCAGACTGGCCTGCACCTGTGGCATAGGCCGGCCATCCAGGGAAGGTTGGTACATCAGCCGGCTCTCCACGTCCACTGAGCCGCCCTGGTAGCGGCTGCTGATGGGGTGTGCCATCTGGCCGTAGGCGCTGCTGCCCATCACAGCGCTGGAGTGCACCGCTGAGCTGGGCTGGTTAGTGCGCACAATCTGGGCCTTGGCCGGCTGCAGCCTCaggccctgctgctgctgctggtgctgggAGGACTGGGAGGACTGGGAGGTCAGCTGATAGGAGCGCTGGCTGCTCATCTTAGACAGTGGGGACTTGGGCCTCCCAGGCAGCTGTTCCTGCTGGTACCGCACAGGGGAGCCCGACTGGGGGCGGTAGAGGCAGATGCTCTCTGTGGGAGGGCTGGCCCTGTACTGGGGGCCCCGGCGCAGGGGGGACGGAGGGGGGCTCTGGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20246 True 2685 lncRNA 0.55 1 32854781 32857465

Neighbor

gene id symbol gene type direction distance location
AMCG00016864 NA coding downstream 162430 32674317 ~ 32692351 (-)
AMCG00016862 NA coding downstream 264247 32584019 ~ 32590534 (-)
AMCG00016857 wnk4,LOC108257086,LOC108429078,LOC105912834 coding downstream 307967 32545619 ~ 32546814 (-)
AMCG00016858 wnk4b,LOC107754305,LOC107582920,LOC107585056,LOC107740640,LOC107683678,LOC108429078 coding downstream 321022 32508349 ~ 32533759 (-)
AMCG00016860 NA coding downstream 384674 32469895 ~ 32470107 (-)
AMCG00016867 NA coding upstream 5781 32863246 ~ 32871525 (-)
AMCG00016868 NA coding upstream 63540 32921005 ~ 32922249 (-)
AMCG00016871 NA coding upstream 64964 32922429 ~ 32924404 (-)
AMCG00016870 NA coding upstream 69566 32927031 ~ 32930813 (-)
AMCG00016869 NA coding upstream 74228 32931693 ~ 32934506 (-)
G16250 NA non-coding downstream 418098 32434236 ~ 32436683 (-)
G16249 NA non-coding downstream 426701 32427852 ~ 32428080 (-)
G16248 NA non-coding downstream 428825 32425716 ~ 32425956 (-)
G16245 NA non-coding downstream 438337 32416191 ~ 32416444 (-)
G16244 NA non-coding downstream 461401 32393142 ~ 32393380 (-)
G16293 NA non-coding upstream 1776 32859241 ~ 32861597 (-)
G16325 NA non-coding upstream 126789 32984254 ~ 32984464 (-)
G16375 NA non-coding upstream 398188 33255653 ~ 33256382 (-)
G16377 NA non-coding upstream 426549 33284014 ~ 33284227 (-)
G16378 NA non-coding upstream 434566 33292031 ~ 33292249 (-)
AMCG00016859 NA other downstream 347462 32497507 ~ 32507319 (-)
G16247 NA other downstream 431343 32423058 ~ 32423438 (-)
AMCG00016847 NA other downstream 586813 32261549 ~ 32267968 (-)
AMCG00016815 NA other downstream 1466513 31380547 ~ 31388268 (-)
G15787 NA other downstream 2325281 30526292 ~ 30529500 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other upstream 318611 33176076 ~ 33178883 (-)
AMCG00016889 LOC107570748,LOC106906011 other upstream 534324 33391789 ~ 33434651 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other upstream 631260 33488725 ~ 33513579 (-)
G16563 NA other upstream 1249225 34106690 ~ 34107941 (-)
AMCG00016938 NA other upstream 2538527 35395992 ~ 35399030 (-)

Expression


Co-expression Network