G16378


Basic Information

Item Value
gene id G16378
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33292031 ~ 33292249 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU20357
CTGGCTGTGGTGTGGCGGGTGCCTCGATGACAGTGACGGTGACGGGGACGACCTGGATGTCCAGGGCACCGGTGGAGGACCGCACCACGCGGATCAGGCCCTTGTCCTGCAACTCCTGCACCTTGAGCTCCAGCTCAGAGTTGGTCTGAGCCGAGCGCTCCCTGTCCTGCTCCTTCTGCCGCAGGGTGGATACCAGAGACGAGGAATCCCGGAGGCTCT

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU20357 True 219 lncRNA 0.59 1 33292031 33292249

Neighbor

gene id symbol gene type direction distance location
AMCG00016879 NA coding downstream 96775 33191702 ~ 33195256 (-)
AMCG00016877 pus3 coding downstream 120098 33168630 ~ 33171933 (-)
AMCG00016878 NA coding downstream 131072 33155283 ~ 33160959 (-)
AMCG00016876 dcakd,LOC107667188 coding downstream 143602 33141438 ~ 33148429 (-)
AMCG00016869 NA coding downstream 357525 32931693 ~ 32934506 (-)
AMCG00016884 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 coding upstream 15492 33307741 ~ 33318582 (-)
AMCG00016888 NA coding upstream 41213 33333462 ~ 33348062 (-)
AMCG00016887 kcnh6a,LOC106601567,LOC105012970,LOC108427397,LOC106527280 coding upstream 89635 33381884 ~ 33390755 (-)
AMCG00016893 map3k3,LOC102777599 coding upstream 147303 33439552 ~ 33473811 (-)
AMCG00016894 NA coding upstream 181761 33474010 ~ 33479455 (-)
G16377 NA non-coding downstream 7804 33284014 ~ 33284227 (-)
G16375 NA non-coding downstream 35649 33255653 ~ 33256382 (-)
G16325 NA non-coding downstream 307567 32984254 ~ 32984464 (-)
G16293 NA non-coding downstream 430434 32859241 ~ 32861597 (-)
G16292 NA non-coding downstream 434566 32854781 ~ 32857465 (-)
G16422 NA non-coding upstream 32837 33325086 ~ 33328341 (-)
G16502 NA non-coding upstream 335851 33628100 ~ 33628919 (-)
G16505 NA non-coding upstream 341878 33634127 ~ 33634339 (-)
G16509 NA non-coding upstream 348949 33641198 ~ 33641979 (-)
G16510 NA non-coding upstream 350729 33642978 ~ 33643661 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other downstream 113148 33176076 ~ 33178883 (-)
AMCG00016859 NA other downstream 784712 32497507 ~ 32507319 (-)
G16247 NA other downstream 868593 32423058 ~ 32423438 (-)
AMCG00016847 NA other downstream 1024063 32261549 ~ 32267968 (-)
AMCG00016815 NA other downstream 1903763 31380547 ~ 31388268 (-)
AMCG00016889 LOC107570748,LOC106906011 other upstream 99540 33391789 ~ 33434651 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other upstream 196476 33488725 ~ 33513579 (-)
G16563 NA other upstream 814441 34106690 ~ 34107941 (-)
AMCG00016938 NA other upstream 2103743 35395992 ~ 35399030 (-)
G17032 NA other upstream 4465908 37758157 ~ 37758471 (-)

Expression


Co-expression Network