G16395


Basic Information

Item Value
gene id G16395
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33325094 ~ 33328342 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU20374
AGGAAGAGACTTTGACGTCAGATGGTGGAATAAAGGGACAGAATCCCTCCTCTGCTTTACACAGTTACTCATAACGTGGCAACGAATGAAAACGCACGTTATGTCACATCGTAGGGCTTTAGGCCACTAGAATTGTTTATTTGCAACTGGGATAGCAGCTGTAACGCATGAAGGCAGTCTGGGCTGTTTCAAATGACGGGTGTGTTAACTACAACATTTGTACACCTTTGGGACTGTTATGCTCAACTATGACGAAATGTAGGTCTGAACACAGGCGCGCAGACTGCTTTTCTCATGTATCCACCGCTGCGTTGCAACTCTCCCAGTCTGTGCCACTGTCATCCTTCCTCAAGTATGGCATCTTAACAGGTttagtttgttgtgtttttgtctgcatGAATTAAATGGGTCAGATGGTTTGACAGGCTGCCCGTACCTTTTCTCAAAGTGTTCagccaggggtggggggggggttctgtcCTTTGAGACTCCTGTGTAAGTTCTCTGGTCAACTAAAGCTGAAGGACAGTACACTTCAATAGCTGCACTGGTGTCTGTCACCAGCTGGAGCCAAATCTGATACATTGTGGATCAAACTGATGGTCACAGCTGCTCTACAGTTCAAGGTCCGATTTGCCACATGTCGTTGGTATAGCCTGCCAGCACTCCAGTGACGAACTTCCTTTTCTCTCATGAGTCCACTTGGCCCAGTCCGTGCAGATCACTCGGTTAAGTGGATTTGTATTGAAGGTTTCAGAGGCCGAGACTGTACTGCTGGTGTACACTTAAGAGCAAGGTCCATTTAAAAGCAGTGAAAATCCGTTTTGTGGGTTTTTGGTTGCGCCCACAGATTGTTTTTACACAGTAAGTCATCCACAACCaatttcaacaaacaaaaagatgacATGCTTGCAATAAGAGGAGTGACCCTGGTTAGGAAATCTGTGTGGCTTTCTGATTTGACAAGATAATGAAGGAATGCAACTGTAGTGTTGTCTATCGGAGACGATGACAAAAGGACACCCTCGGAGGGGGTGGCTTTTTAAGTGTTGATCCTTACAGTGGTAATGAATCCCAGACAACAGATTGGTTCTTGCTGAAGTCCtaggtattttaattaaatccaagGGTGCCTCTTCAGATTCCTTTTGTATCTTAATGACTCTGTGCAGGAAGCTGTTGGTGCAGTACACTAGCAGAGCAGATTCATGTGTTGCTGTGCTATACAACTCTTCAGAGGCCTGGATTGAATAGAAacctctttttattattttttcccttatcTAGGGTTCTTCATTTTCAGCTGTCATTGTTCTTCTGCCTCCTGTGTTTCTGCATCTGCTTATTGGTCTGTAATTGAAGTGGGAGCATTTCAGTTGTGCACTGAAGATTTTAAATCATGTCCTGtaggagttttttttgttgcaaaTCCCTAGTTAACATAATAGAAAACTCACATGACACAACTGTACTTGGAAAGTTGGAACTGAACACAGGGCCTATATGGGAGTGgctgttaaaatataattcaggTTTGGAAGTAGCTTATACAGgagaagaaaatatgttttaaattatgaaaagtaATGACAATTAACTACGACAGTGgaagatattttcttttctatatAAGGTTGTTTAACTTAGTACGTGATTGTGTTGGTCGTATGCAGTTATTGGTGAAACAGGAGAGTAATCGGTTGTTGTCTGGGTCACTGGGGCAGTGGAGTGGGATCAGAGGGTGCTAGGCtaatgtgcacacacacacacacacacacacacacacacacacctctgccCACTAGTTCCATGTATGACTCAAAAATCCAAGTCTCTCCTCTTTTATGTGAATTTTACCTTTTAGCCTGGACTGAGTCCCTCAACACCAGAAACTTAGACACGGCATAACTTCATCTCGGTAGTGCTGGGAATCCCCTTTGTATTTAATGAAGCCTGCCACAATAACCagagaggggtggggtgggggggtctgggCATTTCCACAGTCCAGAAGGAAACTGATCCCGTCTCAGAGCCTTGCCTGTGCTATGCCCGTGAGACTCTTCTTTTCTATGTGTCTTTACTTCTCCCATTTCTTGTGCTCAATATGAAAGGTTACCCTTTTTAGCATGTTTgtagtggaaaaaatatataatgcatcttATATCCTACTTAAGATCTTGATAGCAATATTCAGCCAGtcattttcttcctgttttcaatttgatttgtttttccatataACCCTTTGTCATGTATAGACTTAACTCTTATATTGTGTCTAGAAAAGCGCCTAAAATCCATTTTTTGCAGCTCTGAGTGCCAGCCGCTAGTGACGGAAGATGCCCCGCCAGACCTGTCACTTGCCAGGCTGAAACTTAAGGGGTGACCcttgcaaaaaaacacacacatatataatgtgtgtgtgtgtgtattatatatatgtatgtatgtatgtatattgagagagagaagtgcTGATGAGAGATGTGGTTAAGCTGTTTTGATTTCACAGAGCTGTCCAAATAAAATGACCATTCATTTCGGTAAGCTCCCAAAGCAACCCTATACCACACTACTTCTTTGATAGGAGTAGTACAAACACAACCAGTCCATTCTGGAATGTATAATTCTGCAATCAGTGGACCTGTAAGTGGAATACTGTAGGATTTCAAGTTGAAATGGCTTACTGGCAAATAAACCCTTGATCAGTGGCATTTATCTCCTGACTCTTATGCTAAGCCAAACTGCCATATCTGTGCAAAAGATGACAAGCAACTGCAAATTCCAAATCCACTCCCCATTTGTATTGCAGATTTCGGCTATATTAACTGGAGTCCCATTACTCACACCAGGGCTAGAATTAATGAGCAAACTATTTGGCAGGGAGGAACGTAGAAGTACCTCATTAAAGTGAGCGAGCGAGACAGGATTGACTCTGGAGTGTATCTCAGATTTTCAGTGACCTCGTCAACCTTCAGGAGCAAGAGACTGTGCCTTTGGCCTTGATTGTGATGCTGAATTTTGGGCAGCTAACAGCCCCCCAAGTCTTCCCTGGGATCTGTTGTGTACAAACGGCACTCCATCTGTCTCTCATCCTCTCTCCTGCCTGCAGCGCATCCCTCATTTCTTTGTAAAAtctgtgagtttttttttctctctgaagcAGTGTGCTTTAATAAATTGTGATAGCTGTTTATTtacaatgaataatacaaaataaaaaaaaacattttcttacaaaATGCC

Function

GO: NA

KEGG:

id description
ko03050 Proteasome
ko05169 Epstein-Barr virus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU20374 True 3249 lncRNA 0.42 1 33325094 33328342

Neighbor

gene id symbol gene type direction distance location
AMCG00016882 NA coding upstream 23181 33293053 ~ 33301913 (+)
AMCG00016883 NA coding upstream 32503 33256225 ~ 33292591 (+)
AMCG00016881 NA coding upstream 80611 33221534 ~ 33244483 (+)
AMCG00016886 NA coding upstream 103810 33207472 ~ 33221284 (+)
AMCG00016885 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 coding upstream 147162 33176271 ~ 33177932 (+)
AMCG00016890 NA coding downstream 195546 33523888 ~ 33548644 (+)
AMCG00016900 strada coding downstream 241070 33569412 ~ 33580105 (+)
AMCG00016903 NA coding downstream 251967 33580309 ~ 33597112 (+)
AMCG00016899 NA coding downstream 268820 33597162 ~ 33617484 (+)
AMCG00016896 NA coding downstream 290950 33619292 ~ 33624535 (+)
G16351 NA non-coding upstream 144655 33180239 ~ 33180439 (+)
G16350 NA non-coding upstream 145154 33179705 ~ 33179940 (+)
G16323 NA non-coding upstream 342764 32981779 ~ 32982330 (+)
G16290 NA non-coding upstream 466078 32857551 ~ 32859016 (+)
G16211 NA non-coding upstream 882509 32438254 ~ 32442585 (+)
G16512 NA non-coding downstream 322739 33651081 ~ 33651289 (+)
G16542 NA non-coding downstream 664840 33993182 ~ 33995382 (+)
G16552 NA non-coding downstream 776114 34104456 ~ 34105687 (+)
G16646 NA non-coding downstream 1269480 34597822 ~ 34599917 (+)
G16668 NA non-coding downstream 1407995 34736337 ~ 34736549 (+)
G16289 NA other upstream 467654 32856361 ~ 32857440 (+)
AMCG00016854 NA other upstream 821722 32499056 ~ 32503372 (+)
AMCG00016841 NA other upstream 1064467 32251808 ~ 32260627 (+)
AMCG00016830 NA other upstream 1573981 31728556 ~ 31751113 (+)
AMCG00016829 NA other upstream 1593648 31701669 ~ 31731446 (+)
AMCG00016898 NA other downstream 301670 33630012 ~ 33650080 (+)
AMCG00016901 NA other downstream 340251 33668593 ~ 33674361 (+)
G16546 NA other downstream 719029 34047371 ~ 34047720 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other downstream 764934 34093276 ~ 34099596 (+)
G16550 NA other downstream 771973 34100315 ~ 34100863 (+)

Expression


Co-expression Network